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The map label for this gene is cph2 [H]

Identifier: 39996000

GI number: 39996000

Start: 957967

End: 960033

Strand: Reverse

Name: cph2 [H]

Synonym: GSU0895

Alternate gene names: 39996000

Gene position: 960033-957967 (Counterclockwise)

Preceding gene: 39996001

Following gene: 308513291

Centisome position: 25.17

GC content: 63.43

Gene sequence:

>2067_bases
GTGCCCCATGTGAACCTGACGACAATTCAGCCGGTGGAACTGCTTGAGGCCCTCAAGTCACACCAGTTCCTCGCGCCCTA
CCACCTGACTTTCTGCTGCGATCAGGACGGAGGGATGCCGCGCTACAAGTCCAGGTTCACGGTCTGCGGCTCGCCGCACC
AGTATCACTTCTGCACGCATTCCTGCATGCTGGCCTTGGAAGACGCGGTCGGACGCGCGGTCGCCGGCAACCGCCCGGTG
GTGTTCCAGTGCAGCGTCGGCCTCCTCAACTTCGCCGTCCCTCTCCGGGCCGGCGACATCCCCTTCACCTGCCTGATCGG
CGGCGGAGTCCGCGACAAGAGCATTGACCTCGCCCGCATGGAATCGCTTGCCGCCGCCGACGGCATGGACGCCTTCGCCC
TGCTGGCCGAGATCGAGGAACTGCCGGTCGCCACCGTCGAAGAAGTCGAGGAGGTGGCGCGCAAGGTGCAGGAACTGGTC
CCCTCCCTGCTGGCCCGCAACCTCCACAGCCAGATATTCGAGAAGACCATGCAGCGGCTCACCGCCATCTCCGGCATCTC
CACCGGCATCGACACGGCGGAATCCGTCTGCGATCTCATGACCCTCATCAGCGAGACCCTCGGCGTCCTCTTCGACATCT
CCAAGATCGCCGTGCTCATCCCCCAGAACGGCCCCACCTCGCCCTACACCGTCAAGGGGATATGGGGACTGCAGCGGGAT
CTCGGCACGATTTCCGGACCCAAGGCGCTGGGCATGTTCCCCAGGGACCGGGCGGGCAGCGTCGTTCTGCAGGAAGATGA
ATGCCGCTCGATCTTCCCGGACCTGGAGGTGAGCCACGCCACTTGCCTCCGCCTCACCTCTGGCCAGGCCGTCCACGGAA
TTCTAGTCCTCTTCGATGCCAGCATCCCGCCCCGGGAAGAGCTGCTGGTCTCCCTGGTGACCGGCAAGGCGGCGACACAG
CTCGCGCGGATGCGGGAAAAGGATAAATACACCTCCGAGATCGCCCAGGCCCGGGAGCTCCTCACCATGTTCAGCGCCCT
GTCGCGGACCGAGAGCAAGGATCAGCTCAACGAGCAGATCCTCGGCATGGCCGCCGACCTGGTGGACGCCACCTGCGGCT
CGCTCATGTTCATCGACGAAAGCGGCTCCCAGCTCAAGATCGAATCGGCCCTCGGCATGAATCTTCACCTGGCCCAGAGC
ATGGTGGTCCAGGTGGGGACCGGCATTGCCGGCAAGGTGGCCGCCAGCGGCAACCCGCTGTTGGTGAACGACATCGAGAA
GGACCGCCGGGTCGGCACCCCCAACCGCCCCCGCTTCAAGACCAAGTCGTTCGTGAGCATTCCCATAAAACTCCGGGAAG
ATACCATCGGCGTGCTCAACCTCTCGGACAAAAAGAACCAGGGGATCTTCACCGACGCCGACCTCAAAATATTGATCACC
TTCACGGATCACGCCTCCATCATGATCGAACGCGCCCTCTCCATCGAGCGGGCCGACATCCTGGAGCAGCTCTCCATCAC
CGACCACCTGACCGGCCTCTACAATCGCCGCTTCCTCAAGCGGCGCATGGAGGAAGAGCTGGCCCGCAGCATCCGTCACA
ACCTGAACCTGACCGTGATGCTCATCGATCTGGACCACTTCAAGATCTACAATGACCTCTGCGGCCACCTGGCCGGCGAC
CGGGCGCTCAAGAGAACGGCCAAGATCCTCAGCGAAACCGCCCGACAGATGGACGTGGTCACCCGCTTCGGCGGCGAAGA
GTTCTGCATCATCCTGCCGGGAACATCCAAGAAGGAGTCCATCTTCGTGGCCGAACGGATCCGGCGCGAGATCGAAGGAG
AGGATTTCCCCCACGAGGATAATCTTCCCTTGGGCCGGCTCACCGCCAGCATCGGCATCGCCTCGTTCCCCGAGGACGGC
AGCACCGAGGCGTCGCTCGTCAAGGCGGCCGACGTGGCCCTCTACCGGGCCAAGTCCGACGGGCGGAACCGGGTAATCAT
CGCAGGGAATTCAGTTGACGACCACGAGCAGATCTCCCGCTTCAAAACGGCGCTCAACCTGCCATGA

Upstream 100 bases:

>100_bases
CGTCGCGAGGACCGTTTCCATGAGGGGGAAAGCGCTCTACGCCCGGGGATGAGATAGAGATCACCCGCGTAGCGCCCTTG
ATATTCCCGAGGAAACAACC

Downstream 100 bases:

>100_bases
AAAAAGGCCGCCCGATCGGACGGCCTTTTTTATGCGACCTCATTACGCAGCTGAACCTTATTCGATCACCGAAGCCCTGG
TGATAAACACGTTCTCCACC

Product: GAF domain/GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 688; Mature: 687

Protein sequence:

>688_residues
MPHVNLTTIQPVELLEALKSHQFLAPYHLTFCCDQDGGMPRYKSRFTVCGSPHQYHFCTHSCMLALEDAVGRAVAGNRPV
VFQCSVGLLNFAVPLRAGDIPFTCLIGGGVRDKSIDLARMESLAAADGMDAFALLAEIEELPVATVEEVEEVARKVQELV
PSLLARNLHSQIFEKTMQRLTAISGISTGIDTAESVCDLMTLISETLGVLFDISKIAVLIPQNGPTSPYTVKGIWGLQRD
LGTISGPKALGMFPRDRAGSVVLQEDECRSIFPDLEVSHATCLRLTSGQAVHGILVLFDASIPPREELLVSLVTGKAATQ
LARMREKDKYTSEIAQARELLTMFSALSRTESKDQLNEQILGMAADLVDATCGSLMFIDESGSQLKIESALGMNLHLAQS
MVVQVGTGIAGKVAASGNPLLVNDIEKDRRVGTPNRPRFKTKSFVSIPIKLREDTIGVLNLSDKKNQGIFTDADLKILIT
FTDHASIMIERALSIERADILEQLSITDHLTGLYNRRFLKRRMEEELARSIRHNLNLTVMLIDLDHFKIYNDLCGHLAGD
RALKRTAKILSETARQMDVVTRFGGEEFCIILPGTSKKESIFVAERIRREIEGEDFPHEDNLPLGRLTASIGIASFPEDG
STEASLVKAADVALYRAKSDGRNRVIIAGNSVDDHEQISRFKTALNLP

Sequences:

>Translated_688_residues
MPHVNLTTIQPVELLEALKSHQFLAPYHLTFCCDQDGGMPRYKSRFTVCGSPHQYHFCTHSCMLALEDAVGRAVAGNRPV
VFQCSVGLLNFAVPLRAGDIPFTCLIGGGVRDKSIDLARMESLAAADGMDAFALLAEIEELPVATVEEVEEVARKVQELV
PSLLARNLHSQIFEKTMQRLTAISGISTGIDTAESVCDLMTLISETLGVLFDISKIAVLIPQNGPTSPYTVKGIWGLQRD
LGTISGPKALGMFPRDRAGSVVLQEDECRSIFPDLEVSHATCLRLTSGQAVHGILVLFDASIPPREELLVSLVTGKAATQ
LARMREKDKYTSEIAQARELLTMFSALSRTESKDQLNEQILGMAADLVDATCGSLMFIDESGSQLKIESALGMNLHLAQS
MVVQVGTGIAGKVAASGNPLLVNDIEKDRRVGTPNRPRFKTKSFVSIPIKLREDTIGVLNLSDKKNQGIFTDADLKILIT
FTDHASIMIERALSIERADILEQLSITDHLTGLYNRRFLKRRMEEELARSIRHNLNLTVMLIDLDHFKIYNDLCGHLAGD
RALKRTAKILSETARQMDVVTRFGGEEFCIILPGTSKKESIFVAERIRREIEGEDFPHEDNLPLGRLTASIGIASFPEDG
STEASLVKAADVALYRAKSDGRNRVIIAGNSVDDHEQISRFKTALNLP
>Mature_687_residues
PHVNLTTIQPVELLEALKSHQFLAPYHLTFCCDQDGGMPRYKSRFTVCGSPHQYHFCTHSCMLALEDAVGRAVAGNRPVV
FQCSVGLLNFAVPLRAGDIPFTCLIGGGVRDKSIDLARMESLAAADGMDAFALLAEIEELPVATVEEVEEVARKVQELVP
SLLARNLHSQIFEKTMQRLTAISGISTGIDTAESVCDLMTLISETLGVLFDISKIAVLIPQNGPTSPYTVKGIWGLQRDL
GTISGPKALGMFPRDRAGSVVLQEDECRSIFPDLEVSHATCLRLTSGQAVHGILVLFDASIPPREELLVSLVTGKAATQL
ARMREKDKYTSEIAQARELLTMFSALSRTESKDQLNEQILGMAADLVDATCGSLMFIDESGSQLKIESALGMNLHLAQSM
VVQVGTGIAGKVAASGNPLLVNDIEKDRRVGTPNRPRFKTKSFVSIPIKLREDTIGVLNLSDKKNQGIFTDADLKILITF
TDHASIMIERALSIERADILEQLSITDHLTGLYNRRFLKRRMEEELARSIRHNLNLTVMLIDLDHFKIYNDLCGHLAGDR
ALKRTAKILSETARQMDVVTRFGGEEFCIILPGTSKKESIFVAERIRREIEGEDFPHEDNLPLGRLTASIGIASFPEDGS
TEASLVKAADVALYRAKSDGRNRVIIAGNSVDDHEQISRFKTALNLP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=38.0952380952381, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=41.3793103448276, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=40.5063291139241, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=40.4761904761905, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI1787802, Length=203, Percent_Identity=34.9753694581281, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=34.5679012345679, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1787816, Length=190, Percent_Identity=33.1578947368421, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=33.1428571428571, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=32.3353293413174, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=235, Percent_Identity=29.7872340425532, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI87081974, Length=160, Percent_Identity=30.625, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=33.1360946745562, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 75505; Mature: 75374

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHVNLTTIQPVELLEALKSHQFLAPYHLTFCCDQDGGMPRYKSRFTVCGSPHQYHFCTH
CCCCCCCCCCHHHHHHHHHCCCEECCEEEEEEECCCCCCCCHHCCEEECCCCCCEEHHHH
SCMLALEDAVGRAVAGNRPVVFQCSVGLLNFAVPLRAGDIPFTCLIGGGVRDKSIDLARM
HHHHHHHHHHHHHHCCCCCEEEEECCCHHHHEEEEECCCCCEEEEECCCCCCCCCHHHHH
ESLAAADGMDAFALLAEIEELPVATVEEVEEVARKVQELVPSLLARNLHSQIFEKTMQRL
HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAISGISTGIDTAESVCDLMTLISETLGVLFDISKIAVLIPQNGPTSPYTVKGIWGLQRD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEHHHHHH
LGTISGPKALGMFPRDRAGSVVLQEDECRSIFPDLEVSHATCLRLTSGQAVHGILVLFDA
HCCCCCCHHCCCCCCCCCCCEEEECCCHHHHCCCCCCCCHHEEEECCCCCEEEEEEEEEC
SIPPREELLVSLVTGKAATQLARMREKDKYTSEIAQARELLTMFSALSRTESKDQLNEQI
CCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LGMAADLVDATCGSLMFIDESGSQLKIESALGMNLHLAQSMVVQVGTGIAGKVAASGNPL
HHHHHHHHHHCCCCEEEEECCCCEEEEEHHCCCCHHHHHHHHHHHCCCCCCEEECCCCCE
LVNDIEKDRRVGTPNRPRFKTKSFVSIPIKLREDTIGVLNLSDKKNQGIFTDADLKILIT
EEECCCHHCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCEEECCCEEEEEE
FTDHASIMIERALSIERADILEQLSITDHLTGLYNRRFLKRRMEEELARSIRHNLNLTVM
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
LIDLDHFKIYNDLCGHLAGDRALKRTAKILSETARQMDVVTRFGGEEFCIILPGTSKKES
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
IFVAERIRREIEGEDFPHEDNLPLGRLTASIGIASFPEDGSTEASLVKAADVALYRAKSD
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHEEEECCC
GRNRVIIAGNSVDDHEQISRFKTALNLP
CCCEEEEECCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
PHVNLTTIQPVELLEALKSHQFLAPYHLTFCCDQDGGMPRYKSRFTVCGSPHQYHFCTH
CCCCCCCCCHHHHHHHHHCCCEECCEEEEEEECCCCCCCCHHCCEEECCCCCCEEHHHH
SCMLALEDAVGRAVAGNRPVVFQCSVGLLNFAVPLRAGDIPFTCLIGGGVRDKSIDLARM
HHHHHHHHHHHHHHCCCCCEEEEECCCHHHHEEEEECCCCCEEEEECCCCCCCCCHHHHH
ESLAAADGMDAFALLAEIEELPVATVEEVEEVARKVQELVPSLLARNLHSQIFEKTMQRL
HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAISGISTGIDTAESVCDLMTLISETLGVLFDISKIAVLIPQNGPTSPYTVKGIWGLQRD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEHHHHHH
LGTISGPKALGMFPRDRAGSVVLQEDECRSIFPDLEVSHATCLRLTSGQAVHGILVLFDA
HCCCCCCHHCCCCCCCCCCCEEEECCCHHHHCCCCCCCCHHEEEECCCCCEEEEEEEEEC
SIPPREELLVSLVTGKAATQLARMREKDKYTSEIAQARELLTMFSALSRTESKDQLNEQI
CCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LGMAADLVDATCGSLMFIDESGSQLKIESALGMNLHLAQSMVVQVGTGIAGKVAASGNPL
HHHHHHHHHHCCCCEEEEECCCCEEEEEHHCCCCHHHHHHHHHHHCCCCCCEEECCCCCE
LVNDIEKDRRVGTPNRPRFKTKSFVSIPIKLREDTIGVLNLSDKKNQGIFTDADLKILIT
EEECCCHHCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCEEECCCEEEEEE
FTDHASIMIERALSIERADILEQLSITDHLTGLYNRRFLKRRMEEELARSIRHNLNLTVM
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
LIDLDHFKIYNDLCGHLAGDRALKRTAKILSETARQMDVVTRFGGEEFCIILPGTSKKES
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
IFVAERIRREIEGEDFPHEDNLPLGRLTASIGIASFPEDGSTEASLVKAADVALYRAKSD
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHEEEECCC
GRNRVIIAGNSVDDHEQISRFKTALNLP
CCCEEEEECCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]