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The map label for this gene is 39995977

Identifier: 39995977

GI number: 39995977

Start: 927359

End: 929023

Strand: Direct

Name: 39995977

Synonym: GSU0871

Alternate gene names: NA

Gene position: 927359-929023 (Clockwise)

Preceding gene: 39995976

Following gene: 39995981

Centisome position: 24.31

GC content: 67.21

Gene sequence:

>1665_bases
ATGCAGGTTCTTCTCGCCTATAAATCCCACCATGCTGGGGCGCGGGATCCCTTTGCGTCGCTGCTGCCCACGGGGCTCGG
CTACCTGAATGGGCTCCTGCGGGCACAGGGCTTCGCTTCCCGCATCGCCAACCTGTCGACCATGGGATGGCGAGAGGTGG
ACGCCCTGCTCCGCCGGGAACGGCCGACCATCCTCGGCATCTCCCAGTACACCCACAACCGGTTCGAGTCACTCAGGCTC
GTCTCCAGCGCCAAAACAGCCGACCCCACGTGCCTGACGGTGCTTGGCGGCCCTCATGCGACCCACTCCTTCGACATGAT
CCTTCAGCATCACCCCCAGGTGGATGCCGTGGTCCTCGGCGAGGGGGAGGAAACCATGCTGGAGCTTGTCCGGACGGTGG
CGGAAGGTAATCGGAGCCTCGCCGGCATCCCGGGCCTGGCGATTCGGGAGGGGAGCGGGATCAGCCATTCGTCCCGTGCA
CCGTTGCGGAATCTCGACGACCTGCCGGTGCCCGCGCGTTACTTCGATAACGCCCTGGGATGCGACCTTCGGCGCCAGCT
CGAGTTCGTCATTACCTCCCGCGGGTGTCCCGCCTCCTGCCGTTTCTGCTCGTCGCCGCGCTTCTGGGGTACGTCGCTGC
GCCTCCGTTCGCCCCGGGCCATGGTCGACGAGATCCGCTATATCCGCGACCGGTTCGGCCTGCTCTCATTTTCGCTTCGC
GACGATACGTTCACGGCCCGCGCCGACCGGGTCATCGAGTTCTGCCGCCTGCTGACGGCCGAAGGGCTCCATATCCTCTG
GAGCTGCCAGTCACGGGTGAACTGCGTCGACGAGGAGATGCTCCTCTGGATGCGGCGTGCCGGTTGCGAGTATGTCCAGT
ACGGGGTAGAGTCCGGCTCCGAGCGGATTCTTGCCCGGCTCGGCAAGCGGATCACCCCGGACCAAGTGCAGCGCGCCGCC
GCGGCTACCCGCCGTGCCGGCATGGATCTCTCCATCTACCTGATTGCCGGCGTGCCCGGCGAGGACGAGGAGGACCTGCG
GGCTACTCTGCGCCTCATCGAAGATATCCGCCCCCATGACGGCCACGTGGCCCCCCTGGCTTACTATCCCGGCACGGCGC
TTTTTGCCGAGGCGGTGCGCGAGGGGCGGGTGCCGGCCGATCTCTTCGAGCGGGAAAAGGGCGAGGCCTGCTTCGTCAGG
AAGGACGCGACGGTGCAGCGGTCCATTGACCGGCTGCTGACAACCCTGGCGCGGGTTGGACGGAAGGCCCGCTTCGGACC
CGCCGACTTTGCCCGTCAGGCGAAGCTCGTCGGCTGGTGCCATGCCGGTGCCCTGGCGGAGGGGGGCTGGTACGAGGAAC
GGGAGGAATGGCGGGAAGCCGAGGCCTGCTACCGGCAGATTACCCACCGACAGCCGGCCAATCCCTGGGGCTGGCTGGCT
CTGGGCGGGCTCCACGGGAGCGTCGGCGACCTGGAGCAGTCCCGGCAGATGTTCACCAGGGTTCTTGAACTTGTGCCGGC
GCACATCCCCGCCCATCTTGCCCTCGGCGATCTGTGCCTGCACGACGGTGACCGGCGGGGAGCCCGTCGCAACTACGAGG
CGGCGCTCACGCTGAACCCCGGTGACGTCGAGGCCCGGGAGCGGCTGAAGGAGCTGAAAGAGTAA

Upstream 100 bases:

>100_bases
GTGGCCGGACACCGGTGGGTCGCCCCGGCGGAGGTGCCCGCCTTCGACCTTCTTCCCGCGGATATTCCGCTCGCGGCCAG
GATAGCACGGGAATTCGGCA

Downstream 100 bases:

>100_bases
GAGAGATAAACGCGGGAAGAGGAAACAAAAAAGGCGGCCACCGTGGGGTGTGCCGCCTTTTGCGTTGCTGTCTGCAGGTT
ACTTGCCGCCGATTCTGATG

Product: radical SAM domain/B12 binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MQVLLAYKSHHAGARDPFASLLPTGLGYLNGLLRAQGFASRIANLSTMGWREVDALLRRERPTILGISQYTHNRFESLRL
VSSAKTADPTCLTVLGGPHATHSFDMILQHHPQVDAVVLGEGEETMLELVRTVAEGNRSLAGIPGLAIREGSGISHSSRA
PLRNLDDLPVPARYFDNALGCDLRRQLEFVITSRGCPASCRFCSSPRFWGTSLRLRSPRAMVDEIRYIRDRFGLLSFSLR
DDTFTARADRVIEFCRLLTAEGLHILWSCQSRVNCVDEEMLLWMRRAGCEYVQYGVESGSERILARLGKRITPDQVQRAA
AATRRAGMDLSIYLIAGVPGEDEEDLRATLRLIEDIRPHDGHVAPLAYYPGTALFAEAVREGRVPADLFEREKGEACFVR
KDATVQRSIDRLLTTLARVGRKARFGPADFARQAKLVGWCHAGALAEGGWYEEREEWREAEACYRQITHRQPANPWGWLA
LGGLHGSVGDLEQSRQMFTRVLELVPAHIPAHLALGDLCLHDGDRRGARRNYEAALTLNPGDVEARERLKELKE

Sequences:

>Translated_554_residues
MQVLLAYKSHHAGARDPFASLLPTGLGYLNGLLRAQGFASRIANLSTMGWREVDALLRRERPTILGISQYTHNRFESLRL
VSSAKTADPTCLTVLGGPHATHSFDMILQHHPQVDAVVLGEGEETMLELVRTVAEGNRSLAGIPGLAIREGSGISHSSRA
PLRNLDDLPVPARYFDNALGCDLRRQLEFVITSRGCPASCRFCSSPRFWGTSLRLRSPRAMVDEIRYIRDRFGLLSFSLR
DDTFTARADRVIEFCRLLTAEGLHILWSCQSRVNCVDEEMLLWMRRAGCEYVQYGVESGSERILARLGKRITPDQVQRAA
AATRRAGMDLSIYLIAGVPGEDEEDLRATLRLIEDIRPHDGHVAPLAYYPGTALFAEAVREGRVPADLFEREKGEACFVR
KDATVQRSIDRLLTTLARVGRKARFGPADFARQAKLVGWCHAGALAEGGWYEEREEWREAEACYRQITHRQPANPWGWLA
LGGLHGSVGDLEQSRQMFTRVLELVPAHIPAHLALGDLCLHDGDRRGARRNYEAALTLNPGDVEARERLKELKE
>Mature_554_residues
MQVLLAYKSHHAGARDPFASLLPTGLGYLNGLLRAQGFASRIANLSTMGWREVDALLRRERPTILGISQYTHNRFESLRL
VSSAKTADPTCLTVLGGPHATHSFDMILQHHPQVDAVVLGEGEETMLELVRTVAEGNRSLAGIPGLAIREGSGISHSSRA
PLRNLDDLPVPARYFDNALGCDLRRQLEFVITSRGCPASCRFCSSPRFWGTSLRLRSPRAMVDEIRYIRDRFGLLSFSLR
DDTFTARADRVIEFCRLLTAEGLHILWSCQSRVNCVDEEMLLWMRRAGCEYVQYGVESGSERILARLGKRITPDQVQRAA
AATRRAGMDLSIYLIAGVPGEDEEDLRATLRLIEDIRPHDGHVAPLAYYPGTALFAEAVREGRVPADLFEREKGEACFVR
KDATVQRSIDRLLTTLARVGRKARFGPADFARQAKLVGWCHAGALAEGGWYEEREEWREAEACYRQITHRQPANPWGWLA
LGGLHGSVGDLEQSRQMFTRVLELVPAHIPAHLALGDLCLHDGDRRGARRNYEAALTLNPGDVEARERLKELKE

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 61893; Mature: 61893

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVLLAYKSHHAGARDPFASLLPTGLGYLNGLLRAQGFASRIANLSTMGWREVDALLRRE
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
RPTILGISQYTHNRFESLRLVSSAKTADPTCLTVLGGPHATHSFDMILQHHPQVDAVVLG
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEC
EGEETMLELVRTVAEGNRSLAGIPGLAIREGSGISHSSRAPLRNLDDLPVPARYFDNALG
CCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
CDLRRQLEFVITSRGCPASCRFCSSPRFWGTSLRLRSPRAMVDEIRYIRDRFGLLSFSLR
CCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCEEEEEC
DDTFTARADRVIEFCRLLTAEGLHILWSCQSRVNCVDEEMLLWMRRAGCEYVQYGVESGS
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCHHHHHHHHHHHHHCCHHHHHHHCCCH
ERILARLGKRITPDQVQRAAAATRRAGMDLSIYLIAGVPGEDEEDLRATLRLIEDIRPHD
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCC
GHVAPLAYYPGTALFAEAVREGRVPADLFEREKGEACFVRKDATVQRSIDRLLTTLARVG
CCEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHC
RKARFGPADFARQAKLVGWCHAGALAEGGWYEEREEWREAEACYRQITHRQPANPWGWLA
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
LGGLHGSVGDLEQSRQMFTRVLELVPAHIPAHLALGDLCLHDGDRRGARRNYEAALTLNP
ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
GDVEARERLKELKE
CCHHHHHHHHHHCC
>Mature Secondary Structure
MQVLLAYKSHHAGARDPFASLLPTGLGYLNGLLRAQGFASRIANLSTMGWREVDALLRRE
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
RPTILGISQYTHNRFESLRLVSSAKTADPTCLTVLGGPHATHSFDMILQHHPQVDAVVLG
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEC
EGEETMLELVRTVAEGNRSLAGIPGLAIREGSGISHSSRAPLRNLDDLPVPARYFDNALG
CCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
CDLRRQLEFVITSRGCPASCRFCSSPRFWGTSLRLRSPRAMVDEIRYIRDRFGLLSFSLR
CCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCEEEEEC
DDTFTARADRVIEFCRLLTAEGLHILWSCQSRVNCVDEEMLLWMRRAGCEYVQYGVESGS
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCHHHHHHHHHHHHHCCHHHHHHHCCCH
ERILARLGKRITPDQVQRAAAATRRAGMDLSIYLIAGVPGEDEEDLRATLRLIEDIRPHD
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCC
GHVAPLAYYPGTALFAEAVREGRVPADLFEREKGEACFVRKDATVQRSIDRLLTTLARVG
CCEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHC
RKARFGPADFARQAKLVGWCHAGALAEGGWYEEREEWREAEACYRQITHRQPANPWGWLA
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
LGGLHGSVGDLEQSRQMFTRVLELVPAHIPAHLALGDLCLHDGDRRGARRNYEAALTLNP
ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
GDVEARERLKELKE
CCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]