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The map label for this gene is tniA

Identifier: 38638068

GI number: 38638068

Start: 426494

End: 428119

Strand: Direct

Name: tniA

Synonym: PHG407

Alternate gene names: NA

Gene position: 426494-428119 (Clockwise)

Preceding gene: 38638067

Following gene: 38638069

Centisome position: 94.32

GC content: 57.93

Gene sequence:

>1626_bases
ATGAGGATTGCAACGAAGCGCGAGCTGGCGATTGCGAGGGTCTTGCGTCCGCTTGGGAGGGCTCCTCTCTCGCGTAGGCA
AGCCGAGAATGCTGGCAAATTGCTTGGAATCCATTGGGCGACGGTTTACCACTTGCGCCGGCGCTTCCTCGCGGATCCGG
TGGCGAGCGCGTTGATACCGTATGAACGAGGTCCCAAAGTGGGAGATACGCGTCTAGCGGCGACTGTCGAGGAAATTGTG
AGGGAGGTACTTTCCGATTGGCTGCCGCGACAGCCTTATCTTGCTCATCCGCTCTTCGAGCTGGTCGTCGAAATCCGGAA
GCGATGCGCAGCGGCAAGTATTAGTCCGCCAAGCAGATCTACCATTTCGCGACGCTGGCGCGCACATCGGGAAGAAGAGG
CACTTCGGCTCGCAACGCTGCCGGGTTCTGAGATTCCCCCAGGCCATCTTGTGGCGCGCTGTCCGATGGACATTGTGCAG
ATTGATCACACGCTGGCCGATTTGATGCTGGTGGATGATGCGAGCCGACGCCCCATTGGCCGGCCATGGCTAAGCATCGC
CCTCGATGTTTCGACAAGATGCGTCGTTGGCGTATACGTCGGGATGGACCGCCCCAACGCGGCAACTGTCGCGTTGCTAT
TGACTCGCGTTGTCTTGCCAAAGGATGGCTGGCTCGCCAGCCTCGATGTTAGCGTTGATTGGCCTATGCACGGCATTCCA
CAGCTACTTCATCTCGATAATGCGGCGGAATTCAAGAGCAGGGCATTGCGAGCGGGGTGTCGGGAGTACGGCGTCGAACT
GATGTACCGACCTGCGGGGAGACCGTACTTCGGGGGCCATATCGAACGTTTGATGAGGACCATCATGGAACGTGTCCACA
GTTTGCCAGGGTCGACTGGCTCGTCACCCAAGGGCCGCAAGGCCAGACCGCCGGAGAAGGAAGCCTCCTTGACGATCCGG
GAGTTTGAGCGGTGGCTAGTTCTCGAGATTGCCGAACGCTATCACCACAACGCTCACCGCGGGCTGCAGGGCGCCACTCC
GTTTTCGCAGTGGGCGACGGCGGGCCAAAAGACGCCTCCACGCTTACTCCCCAATGCGGCGCCTGAACCATTGCGCTTTC
TAATCCAGTTCTTGCCGATGACTTATCGGACCGTGCAGTCAGATGGGCTGACGCTGTTCTACCTGCGGTACTGGCATCCA
ATATTTGCCGCCTGGCGGGCGACCAAGCAGAAAGTCATTACAAGATACCACCCTGAGGATCTCTCCAGAATCTTTGTCAG
TGTCGACGGAAAGCACTACGTTGAAGCGACATTTGCGGACTTGCGTCGTGGCCGAGTGTCATTGTGGGAGCAGCGCAGTG
CGTTACGGCGCTTACGATCCCAAGGCAAAGAGTATGTCACAGAAGCGAAGGTATTTGACGCGATTGATGAGCAACGTCGG
ATTGTCTCCCACGCTAGATCGCAAACGTTAGGAGCAAATCGTCAAGGCGAAGCTCTGAAGGAACTGTCGCCACAGAGCCT
TGGCGAGGCGCCAAACTCGGTACGTGCAAACACGTTGGACAAGCAATCTGAGCCGGCAGTGGATTACAACAAGCCGCCCC
CAGTGTTCAATGTCGAGCCGCTGTAA

Upstream 100 bases:

>100_bases
GCAACGCGTTTTGGGGCGTTGGGTCCACTAATTCCGCCAGCCTGGGTCACCCGTTCAGTAAATCGCCTAATGTGACTGAG
ACCACTGTCTTGGACACGCG

Downstream 100 bases:

>100_bases
TTGCAATGCGCCCGCTGCTAACACATCTGCTCCCGGCCGCGAGAGAGCTGGCTATGTGCGACGATGGTGTCAGAATTAAA
GGCTTGGCACGTAGCCATTG

Product: putative TniA-like transposition protein

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MRIATKRELAIARVLRPLGRAPLSRRQAENAGKLLGIHWATVYHLRRRFLADPVASALIPYERGPKVGDTRLAATVEEIV
REVLSDWLPRQPYLAHPLFELVVEIRKRCAAASISPPSRSTISRRWRAHREEEALRLATLPGSEIPPGHLVARCPMDIVQ
IDHTLADLMLVDDASRRPIGRPWLSIALDVSTRCVVGVYVGMDRPNAATVALLLTRVVLPKDGWLASLDVSVDWPMHGIP
QLLHLDNAAEFKSRALRAGCREYGVELMYRPAGRPYFGGHIERLMRTIMERVHSLPGSTGSSPKGRKARPPEKEASLTIR
EFERWLVLEIAERYHHNAHRGLQGATPFSQWATAGQKTPPRLLPNAAPEPLRFLIQFLPMTYRTVQSDGLTLFYLRYWHP
IFAAWRATKQKVITRYHPEDLSRIFVSVDGKHYVEATFADLRRGRVSLWEQRSALRRLRSQGKEYVTEAKVFDAIDEQRR
IVSHARSQTLGANRQGEALKELSPQSLGEAPNSVRANTLDKQSEPAVDYNKPPPVFNVEPL

Sequences:

>Translated_541_residues
MRIATKRELAIARVLRPLGRAPLSRRQAENAGKLLGIHWATVYHLRRRFLADPVASALIPYERGPKVGDTRLAATVEEIV
REVLSDWLPRQPYLAHPLFELVVEIRKRCAAASISPPSRSTISRRWRAHREEEALRLATLPGSEIPPGHLVARCPMDIVQ
IDHTLADLMLVDDASRRPIGRPWLSIALDVSTRCVVGVYVGMDRPNAATVALLLTRVVLPKDGWLASLDVSVDWPMHGIP
QLLHLDNAAEFKSRALRAGCREYGVELMYRPAGRPYFGGHIERLMRTIMERVHSLPGSTGSSPKGRKARPPEKEASLTIR
EFERWLVLEIAERYHHNAHRGLQGATPFSQWATAGQKTPPRLLPNAAPEPLRFLIQFLPMTYRTVQSDGLTLFYLRYWHP
IFAAWRATKQKVITRYHPEDLSRIFVSVDGKHYVEATFADLRRGRVSLWEQRSALRRLRSQGKEYVTEAKVFDAIDEQRR
IVSHARSQTLGANRQGEALKELSPQSLGEAPNSVRANTLDKQSEPAVDYNKPPPVFNVEPL
>Mature_541_residues
MRIATKRELAIARVLRPLGRAPLSRRQAENAGKLLGIHWATVYHLRRRFLADPVASALIPYERGPKVGDTRLAATVEEIV
REVLSDWLPRQPYLAHPLFELVVEIRKRCAAASISPPSRSTISRRWRAHREEEALRLATLPGSEIPPGHLVARCPMDIVQ
IDHTLADLMLVDDASRRPIGRPWLSIALDVSTRCVVGVYVGMDRPNAATVALLLTRVVLPKDGWLASLDVSVDWPMHGIP
QLLHLDNAAEFKSRALRAGCREYGVELMYRPAGRPYFGGHIERLMRTIMERVHSLPGSTGSSPKGRKARPPEKEASLTIR
EFERWLVLEIAERYHHNAHRGLQGATPFSQWATAGQKTPPRLLPNAAPEPLRFLIQFLPMTYRTVQSDGLTLFYLRYWHP
IFAAWRATKQKVITRYHPEDLSRIFVSVDGKHYVEATFADLRRGRVSLWEQRSALRRLRSQGKEYVTEAKVFDAIDEQRR
IVSHARSQTLGANRQGEALKELSPQSLGEAPNSVRANTLDKQSEPAVDYNKPPPVFNVEPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 61234; Mature: 61234

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIATKRELAIARVLRPLGRAPLSRRQAENAGKLLGIHWATVYHLRRRFLADPVASALIP
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
YERGPKVGDTRLAATVEEIVREVLSDWLPRQPYLAHPLFELVVEIRKRCAAASISPPSRS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
TISRRWRAHREEEALRLATLPGSEIPPGHLVARCPMDIVQIDHTLADLMLVDDASRRPIG
HHHHHHHHHHHHHHHEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC
RPWLSIALDVSTRCVVGVYVGMDRPNAATVALLLTRVVLPKDGWLASLDVSVDWPMHGIP
CCHHEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCH
QLLHLDNAAEFKSRALRAGCREYGVELMYRPAGRPYFGGHIERLMRTIMERVHSLPGSTG
HHHHCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
SSPKGRKARPPEKEASLTIREFERWLVLEIAERYHHNAHRGLQGATPFSQWATAGQKTPP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC
RLLPNAAPEPLRFLIQFLPMTYRTVQSDGLTLFYLRYWHPIFAAWRATKQKVITRYHPED
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHH
LSRIFVSVDGKHYVEATFADLRRGRVSLWEQRSALRRLRSQGKEYVTEAKVFDAIDEQRR
HHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSHARSQTLGANRQGEALKELSPQSLGEAPNSVRANTLDKQSEPAVDYNKPPPVFNVEP
HHHHHHHHHCCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
L
C
>Mature Secondary Structure
MRIATKRELAIARVLRPLGRAPLSRRQAENAGKLLGIHWATVYHLRRRFLADPVASALIP
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
YERGPKVGDTRLAATVEEIVREVLSDWLPRQPYLAHPLFELVVEIRKRCAAASISPPSRS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
TISRRWRAHREEEALRLATLPGSEIPPGHLVARCPMDIVQIDHTLADLMLVDDASRRPIG
HHHHHHHHHHHHHHHEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC
RPWLSIALDVSTRCVVGVYVGMDRPNAATVALLLTRVVLPKDGWLASLDVSVDWPMHGIP
CCHHEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCH
QLLHLDNAAEFKSRALRAGCREYGVELMYRPAGRPYFGGHIERLMRTIMERVHSLPGSTG
HHHHCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
SSPKGRKARPPEKEASLTIREFERWLVLEIAERYHHNAHRGLQGATPFSQWATAGQKTPP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC
RLLPNAAPEPLRFLIQFLPMTYRTVQSDGLTLFYLRYWHPIFAAWRATKQKVITRYHPED
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHH
LSRIFVSVDGKHYVEATFADLRRGRVSLWEQRSALRRLRSQGKEYVTEAKVFDAIDEQRR
HHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSHARSQTLGANRQGEALKELSPQSLGEAPNSVRANTLDKQSEPAVDYNKPPPVFNVEP
HHHHHHHHHCCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]