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The map label for this gene is ccmH [H]

Identifier: 38637885

GI number: 38637885

Start: 237587

End: 238834

Strand: Direct

Name: ccmH [H]

Synonym: PHG221

Alternate gene names: 38637885

Gene position: 237587-238834 (Clockwise)

Preceding gene: 38637884

Following gene: 38637886

Centisome position: 52.55

GC content: 68.59

Gene sequence:

>1248_bases
ATGACGACCTTCTGGCTCCTAGCCGCCGCGCTGATCGCCGCCACCATGGCTTGCCTCCTCTGGCCGCTGCTGCGCCACCG
TGTCGCGCCAGATCCCGACACGCCGGAGCGCGCCCTGCTGGCAGACCTGTACCGCGAGCAACTGAATGAGCTGGATACCG
ACCTGCAAAGCGGCACGCTGACCGCCGCGCGGCACGCGGGGGCGCGCGACGAACTCGCCCGCCGCTTGCTGGACGAGAAC
GCCAGCGCCACGGCCGCCGCACGACAGGCAAAGCCTTCGCCCCTGCTCGCCGCCGCGCTGCTGGCCGTCCTGCCCAGCGC
TGCCATCCTGCTCTACCTGCACCTGGGCAATCCCGTCGCGCAATGGAGCGCCAATGACATGCCGGCGGCGACCGACGGCC
AGCACCAGCTCAGCGGTTTGCAGCTCGAAGGCATGGTCAACCAGCTGGCAAAGCGCCTGCGCGATGCGCCCGGCGACGCC
GAAGGCTGGGCGATGCTGGCGCGCTCCTACAGCGTGATGGAGCGCCACGACGATGCCGCCGCGGCCTATGCGAAAGCCAT
TGCGCTGGCGCCCGACGTCGCGCCGCTGCGTTCGGATTACGCGGACGTGCTGGCAAGCCTCAACGGCGGCTCGCTGGAAG
GCGCGCCGATGGAGCAGATCGGCCGCGCGCTGGCACTGGATCCCGATGATCCCAAGGGGCTGGCGCTCGCCGCCAGCGCT
GCGGCGGAACGCGGAGACACGCAGGGTGCGATCGGCTACTGGGAACACCTGTACCGGCTGCTGCCTGCGGATTCGCAGAC
GGCGGCGAGAATTGCGGCAAATCTTGCGGCGGCGCGAGGGACTGCGGCCACCTCGCTTACGGCCAGCGGCGAAATCGGCG
GCATTGTGACACTCGGCGAGATGGCGGGCAGGATTCCTCGGCCTGACGAAACCGTCTTCATCTATGCGCGCGCCGTGGAT
GGCCCGCGCATGCCGCTGGCGGTAATCAGACGGACAGTGCGCGATTTGCCGGCGCGGTTCACGCTGGATGATTCCATGGC
GCTCGGGCCCGACCACAAGCTGACCGGATATCCACGGCTAATGGTCGAGGCCCGCATTTCCGCAAGTGGCAACGCCACAC
CACAGGCTGGCGATCTCGTCGGACGCACCGGTCCGGTAGCTGCGGGCAGCCACGAAGTGCAAATCGTGATCGACAGCATA
GTGCCGGATGCAGGGACGGCACCGGCCGCTGACCGTATACCGCACTAG

Upstream 100 bases:

>100_bases
CCGGGCTACCGCTCGACGCCGAGGCGCAACGACAGCTCGCAGCATTGCTGGACGAGACGTCCGGGCAACCTGCCAGTCCG
CCAGCGGAGGCACGACAGCC

Downstream 100 bases:

>100_bases
AAGTGTCACGAGCTCGCAATCGCGGTAGGAATACCGGTTGCCCGGTACCCACCGGGTCGCCGTGGCAGTCACCCGCTTCC
GACTCCCACGTGTCGCACTT

Product: cytochrome C-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MTTFWLLAAALIAATMACLLWPLLRHRVAPDPDTPERALLADLYREQLNELDTDLQSGTLTAARHAGARDELARRLLDEN
ASATAAARQAKPSPLLAAALLAVLPSAAILLYLHLGNPVAQWSANDMPAATDGQHQLSGLQLEGMVNQLAKRLRDAPGDA
EGWAMLARSYSVMERHDDAAAAYAKAIALAPDVAPLRSDYADVLASLNGGSLEGAPMEQIGRALALDPDDPKGLALAASA
AAERGDTQGAIGYWEHLYRLLPADSQTAARIAANLAAARGTAATSLTASGEIGGIVTLGEMAGRIPRPDETVFIYARAVD
GPRMPLAVIRRTVRDLPARFTLDDSMALGPDHKLTGYPRLMVEARISASGNATPQAGDLVGRTGPVAAGSHEVQIVIDSI
VPDAGTAPAADRIPH

Sequences:

>Translated_415_residues
MTTFWLLAAALIAATMACLLWPLLRHRVAPDPDTPERALLADLYREQLNELDTDLQSGTLTAARHAGARDELARRLLDEN
ASATAAARQAKPSPLLAAALLAVLPSAAILLYLHLGNPVAQWSANDMPAATDGQHQLSGLQLEGMVNQLAKRLRDAPGDA
EGWAMLARSYSVMERHDDAAAAYAKAIALAPDVAPLRSDYADVLASLNGGSLEGAPMEQIGRALALDPDDPKGLALAASA
AAERGDTQGAIGYWEHLYRLLPADSQTAARIAANLAAARGTAATSLTASGEIGGIVTLGEMAGRIPRPDETVFIYARAVD
GPRMPLAVIRRTVRDLPARFTLDDSMALGPDHKLTGYPRLMVEARISASGNATPQAGDLVGRTGPVAAGSHEVQIVIDSI
VPDAGTAPAADRIPH
>Mature_414_residues
TTFWLLAAALIAATMACLLWPLLRHRVAPDPDTPERALLADLYREQLNELDTDLQSGTLTAARHAGARDELARRLLDENA
SATAAARQAKPSPLLAAALLAVLPSAAILLYLHLGNPVAQWSANDMPAATDGQHQLSGLQLEGMVNQLAKRLRDAPGDAE
GWAMLARSYSVMERHDDAAAAYAKAIALAPDVAPLRSDYADVLASLNGGSLEGAPMEQIGRALALDPDDPKGLALAASAA
AERGDTQGAIGYWEHLYRLLPADSQTAARIAANLAAARGTAATSLTASGEIGGIVTLGEMAGRIPRPDETVFIYARAVDG
PRMPLAVIRRTVRDLPARFTLDDSMALGPDHKLTGYPRLMVEARISASGNATPQAGDLVGRTGPVAAGSHEVQIVIDSIV
PDAGTAPAADRIPH

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43523; Mature: 43392

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFWLLAAALIAATMACLLWPLLRHRVAPDPDTPERALLADLYREQLNELDTDLQSGTL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
TAARHAGARDELARRLLDENASATAAARQAKPSPLLAAALLAVLPSAAILLYLHLGNPVA
HHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCCHH
QWSANDMPAATDGQHQLSGLQLEGMVNQLAKRLRDAPGDAEGWAMLARSYSVMERHDDAA
HCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH
AAYAKAIALAPDVAPLRSDYADVLASLNGGSLEGAPMEQIGRALALDPDDPKGLALAASA
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEECCCCCCCCEEEEHHH
AAERGDTQGAIGYWEHLYRLLPADSQTAARIAANLAAARGTAATSLTASGEIGGIVTLGE
HHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHEEECCCCCCCEEEEHH
MAGRIPRPDETVFIYARAVDGPRMPLAVIRRTVRDLPARFTLDDSMALGPDHKLTGYPRL
HHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEE
MVEARISASGNATPQAGDLVGRTGPVAAGSHEVQIVIDSIVPDAGTAPAADRIPH
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TTFWLLAAALIAATMACLLWPLLRHRVAPDPDTPERALLADLYREQLNELDTDLQSGTL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
TAARHAGARDELARRLLDENASATAAARQAKPSPLLAAALLAVLPSAAILLYLHLGNPVA
HHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCCHH
QWSANDMPAATDGQHQLSGLQLEGMVNQLAKRLRDAPGDAEGWAMLARSYSVMERHDDAA
HCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH
AAYAKAIALAPDVAPLRSDYADVLASLNGGSLEGAPMEQIGRALALDPDDPKGLALAASA
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEECCCCCCCCEEEEHHH
AAERGDTQGAIGYWEHLYRLLPADSQTAARIAANLAAARGTAATSLTASGEIGGIVTLGE
HHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHEEECCCCCCCEEEEHH
MAGRIPRPDETVFIYARAVDGPRMPLAVIRRTVRDLPARFTLDDSMALGPDHKLTGYPRL
HHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEE
MVEARISASGNATPQAGDLVGRTGPVAAGSHEVQIVIDSIVPDAGTAPAADRIPH
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]