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The map label for this gene is ccmL [H]

Identifier: 38637884

GI number: 38637884

Start: 237102

End: 237590

Strand: Direct

Name: ccmL [H]

Synonym: PHG220

Alternate gene names: 38637884

Gene position: 237102-237590 (Clockwise)

Preceding gene: 38637883

Following gene: 38637885

Centisome position: 52.44

GC content: 68.3

Gene sequence:

>489_bases
ATGCGTAGGCGATTCGGCTCATTGCTGAGCGCCGTGATCTGCGGCCTTGCGTTGCACGCCGGCGCCGCCACGCTCTCGGA
CACGGAACTCGATGCGCGCGTCCACGCCTTGTCCGGCCAGCTGCGCTGCCTGGTCTGCCAAAACCAGACCTTGGCCGACT
CCAACGCCGACCTCGCCGTCGACCTGCGCCGGCAGATCCGCGAGCGGCTGCGCGGCGGCGCCAGCGATGAAGCCGTGAAG
GACTACTTGGTGCAGCGCTATGGCGACTTCGTGCTCTACAAGCCGCCGCTCAGGCCGCTGACCTGGCTGCTGTGGTTCGG
TCCCTTGCTGTTGGTGGCCGGCGTGACAATCGCCATCATTCGCGCGCGCTCGCGCAGCGTCGCAGCCGGGCTACCGCTCG
ACGCCGAGGCGCAACGACAGCTCGCAGCATTGCTGGACGAGACGTCCGGGCAACCTGCCAGTCCGCCAGCGGAGGCACGA
CAGCCATGA

Upstream 100 bases:

>100_bases
GGCGTGGTGCGCTACCGTCAGGCCGGCCCGGTCACGCGCGAGGTGCTGGAGCGCAAGCTGATGCCACTCATCGAGCAGCT
CGAGAAAAGCGGGGACGGCC

Downstream 100 bases:

>100_bases
CGACCTTCTGGCTCCTAGCCGCCGCGCTGATCGCCGCCACCATGGCTTGCCTCCTCTGGCCGCTGCTGCGCCACCGTGTC
GCGCCAGATCCCGACACGCC

Product: cytochrome C-type biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MRRRFGSLLSAVICGLALHAGAATLSDTELDARVHALSGQLRCLVCQNQTLADSNADLAVDLRRQIRERLRGGASDEAVK
DYLVQRYGDFVLYKPPLRPLTWLLWFGPLLLVAGVTIAIIRARSRSVAAGLPLDAEAQRQLAALLDETSGQPASPPAEAR
QP

Sequences:

>Translated_162_residues
MRRRFGSLLSAVICGLALHAGAATLSDTELDARVHALSGQLRCLVCQNQTLADSNADLAVDLRRQIRERLRGGASDEAVK
DYLVQRYGDFVLYKPPLRPLTWLLWFGPLLLVAGVTIAIIRARSRSVAAGLPLDAEAQRQLAALLDETSGQPASPPAEAR
QP
>Mature_162_residues
MRRRFGSLLSAVICGLALHAGAATLSDTELDARVHALSGQLRCLVCQNQTLADSNADLAVDLRRQIRERLRGGASDEAVK
DYLVQRYGDFVLYKPPLRPLTWLLWFGPLLLVAGVTIAIIRARSRSVAAGLPLDAEAQRQLAALLDETSGQPASPPAEAR
QP

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=113, Percent_Identity=40.7079646017699, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1790512, Length=61, Percent_Identity=44.2622950819672, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17552; Mature: 17552

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRFGSLLSAVICGLALHAGAATLSDTELDARVHALSGQLRCLVCQNQTLADSNADLAV
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHH
DLRRQIRERLRGGASDEAVKDYLVQRYGDFVLYKPPLRPLTWLLWFGPLLLVAGVTIAII
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
RARSRSVAAGLPLDAEAQRQLAALLDETSGQPASPPAEARQP
HHCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRRRFGSLLSAVICGLALHAGAATLSDTELDARVHALSGQLRCLVCQNQTLADSNADLAV
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHH
DLRRQIRERLRGGASDEAVKDYLVQRYGDFVLYKPPLRPLTWLLWFGPLLLVAGVTIAII
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
RARSRSVAAGLPLDAEAQRQLAALLDETSGQPASPPAEARQP
HHCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]