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The map label for this gene is napC [H]

Identifier: 38637877

GI number: 38637877

Start: 231212

End: 231799

Strand: Direct

Name: napC [H]

Synonym: PHG213

Alternate gene names: 38637877

Gene position: 231212-231799 (Clockwise)

Preceding gene: 38637876

Following gene: 38637878

Centisome position: 51.14

GC content: 62.24

Gene sequence:

>588_bases
ATGCTCGACCTGATCAAGCGCTACTGGCGGACGATCAACCGGCCCAGCGCCTATTTCAGCCTGGGTTTCCTGACCCTGGG
CGGCTTCATTGCCGGCGTGATGTTCTGGGGCGCGTTCAACACGGCGCTGGAGCTGACCAACACCGAGCAGTTCTGCACCG
GCTGCCACGAGATGCGTGATAACGTCTACCAGGAGCTGCAGGGCACCATCCACTTCACCAACCGCAGCGGCGTGCGCGCC
AAGTGCTCGGACTGCCATGTGCCGCACAACTGGACCACCAAGATGGCGCGCAAGATGCAGGCATCCAAGGAGGTCTGGGG
CAAGGTCTTCGGCACCATCGACACCCGTGAAAAGTTCCAGGCGCACCGGCTCACGCTGGCCCAGCACGAGTGGGCCCGCT
TCAAGGCCAACGACTCGCTGGAATGCCGCAACTGCCACGACTACCAGTCGATGGACTTCACGCGGCAGAGCCCGCGCGCA
CAGGCCATGCACTCGACTTATCTAGCCAACAAGGAAAAGACCTGCATCGACTGCCACAAGGGCATCGCCCACCATCTTCC
CGACGTGTCCAAGGCCGGGGAGAAATGA

Upstream 100 bases:

>100_bases
GCCGCTGATCGGCAACAACTTCGTCGACGTGGACACCATCCTCAAGCGCAGGCCCGGCGCCAAGGGCGCCGCCAAATAAA
ACGAACAAAGTGGGTACGCC

Downstream 100 bases:

>100_bases
CACGTGCCAGCCCGCTCGCCCGAGCCGTTGCCTGATCATTCGTCGGTCTGCTCGCCCGGCTGCGCAGACCTTCCCATCCT
TGCCGCCAGCGGGCTCGGCT

Product: periplasmic nitrate reductase transmembrane protein

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MLDLIKRYWRTINRPSAYFSLGFLTLGGFIAGVMFWGAFNTALELTNTEQFCTGCHEMRDNVYQELQGTIHFTNRSGVRA
KCSDCHVPHNWTTKMARKMQASKEVWGKVFGTIDTREKFQAHRLTLAQHEWARFKANDSLECRNCHDYQSMDFTRQSPRA
QAMHSTYLANKEKTCIDCHKGIAHHLPDVSKAGEK

Sequences:

>Translated_195_residues
MLDLIKRYWRTINRPSAYFSLGFLTLGGFIAGVMFWGAFNTALELTNTEQFCTGCHEMRDNVYQELQGTIHFTNRSGVRA
KCSDCHVPHNWTTKMARKMQASKEVWGKVFGTIDTREKFQAHRLTLAQHEWARFKANDSLECRNCHDYQSMDFTRQSPRA
QAMHSTYLANKEKTCIDCHKGIAHHLPDVSKAGEK
>Mature_195_residues
MLDLIKRYWRTINRPSAYFSLGFLTLGGFIAGVMFWGAFNTALELTNTEQFCTGCHEMRDNVYQELQGTIHFTNRSGVRA
KCSDCHVPHNWTTKMARKMQASKEVWGKVFGTIDTREKFQAHRLTLAQHEWARFKANDSLECRNCHDYQSMDFTRQSPRA
QAMHSTYLANKEKTCIDCHKGIAHHLPDVSKAGEK

Specific function: Mediates electron flow from quinones to the NapAB complex [H]

COG id: COG3005

COG function: function code C; Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788530, Length=189, Percent_Identity=56.6137566137566, Blast_Score=234, Evalue=3e-63,
Organism=Escherichia coli, GI1787230, Length=187, Percent_Identity=42.2459893048128, Blast_Score=170, Evalue=7e-44,
Organism=Escherichia coli, GI1788181, Length=148, Percent_Identity=44.5945945945946, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011031
- InterPro:   IPR005126
- InterPro:   IPR011885 [H]

Pfam domain/function: PF03264 Cytochrom_NNT [H]

EC number: NA

Molecular weight: Translated: 22496; Mature: 22496

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLIKRYWRTINRPSAYFSLGFLTLGGFIAGVMFWGAFNTALELTNTEQFCTGCHEMRD
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHH
NVYQELQGTIHFTNRSGVRAKCSDCHVPHNWTTKMARKMQASKEVWGKVFGTIDTREKFQ
HHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AHRLTLAQHEWARFKANDSLECRNCHDYQSMDFTRQSPRAQAMHSTYLANKEKTCIDCHK
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
GIAHHLPDVSKAGEK
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MLDLIKRYWRTINRPSAYFSLGFLTLGGFIAGVMFWGAFNTALELTNTEQFCTGCHEMRD
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHH
NVYQELQGTIHFTNRSGVRAKCSDCHVPHNWTTKMARKMQASKEVWGKVFGTIDTREKFQ
HHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AHRLTLAQHEWARFKANDSLECRNCHDYQSMDFTRQSPRAQAMHSTYLANKEKTCIDCHK
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
GIAHHLPDVSKAGEK
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7639719 [H]