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The map label for this gene is hoxY

Identifier: 38637755

GI number: 38637755

Start: 82218

End: 82847

Strand: Direct

Name: hoxY

Synonym: PHG090

Alternate gene names: 38637755

Gene position: 82218-82847 (Clockwise)

Preceding gene: 38637754

Following gene: 38637756

Centisome position: 18.18

GC content: 59.21

Gene sequence:

>630_bases
ATGAGAGCCCCCCACAAAGACGAGATTGCGTCGCACGAATTGCCTGCGACGCCGATGGATCCGGCGCTGGCCGCGAACCG
TGAAGGCAAGATCAAGGTGGCCACGATCGGTCTGTGCGGCTGCTGGGGGTGTACCTTGTCCTTTCTCGACATGGACGAGC
GGCTCCTGCCGCTGTTGGAGAAAGTCACCCTCCTCCGCTCGTCGCTGACCGATATCAAACGAATTCCGGAGCGCTGTGCG
ATCGGCTTCGTGGAAGGTGGCGTCTCGAGCGAGGAGAACATCGAAACGCTGGAGCACTTTCGCGAGAACTGCGACATCCT
GATTTCGGTCGGGGCGTGCGCGGTGTGGGGCGGTGTGCCGGCGATGCGCAACGTCTTCGAGCTGAAAGATTGTCTGGCAG
AGGCTTATGTCAACTCGGCGACTGCCGTCCCGGGCGCCAAGGCCGTCGTTCCATTCCATCCCGATATCCCGAGGATCACC
ACCAAGGTCTACCCTTGTCATGAGGTGGTCAAGATGGATTATTTCATTCCGGGTTGTCCCCCGGATGGAGATGCCATCTT
CAAGGTGCTGGACGATCTGGTGAATGGACGGCCATTCGATTTGCCGAGCTCGATCAATCGCTACGATTGA

Upstream 100 bases:

>100_bases
GCACCATTCTCGAGAAACGGGTCGGTTATGACGATCCCATCGGACGACGCAAGTACGAAATCCAGTCGGTGCGCGCACGC
GCGCTGGAAGGAGAAGACAA

Downstream 100 bases:

>100_bases
TTAACGGAGGGTTTGTTATGAGCAGAAAACTGGTTATCGACCCGGTGACCCGCATCGAGGGTCACGGCAAGGTGGTGGTG
CACCTGGATGACGACAACAA

Product: NAD-reducing hydrogenase moiety large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MRAPHKDEIASHELPATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLPLLEKVTLLRSSLTDIKRIPERCA
IGFVEGGVSSEENIETLEHFRENCDILISVGACAVWGGVPAMRNVFELKDCLAEAYVNSATAVPGAKAVVPFHPDIPRIT
TKVYPCHEVVKMDYFIPGCPPDGDAIFKVLDDLVNGRPFDLPSSINRYD

Sequences:

>Translated_209_residues
MRAPHKDEIASHELPATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLPLLEKVTLLRSSLTDIKRIPERCA
IGFVEGGVSSEENIETLEHFRENCDILISVGACAVWGGVPAMRNVFELKDCLAEAYVNSATAVPGAKAVVPFHPDIPRIT
TKVYPCHEVVKMDYFIPGCPPDGDAIFKVLDDLVNGRPFDLPSSINRYD
>Mature_209_residues
MRAPHKDEIASHELPATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLPLLEKVTLLRSSLTDIKRIPERCA
IGFVEGGVSSEENIETLEHFRENCDILISVGACAVWGGVPAMRNVFELKDCLAEAYVNSATAVPGAKAVVPFHPDIPRIT
TKVYPCHEVVKMDYFIPGCPPDGDAIFKVLDDLVNGRPFDLPSSINRYD

Specific function: Unknown

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HOXY_CUPNH (P22319)

Other databases:

- EMBL:   M55230
- EMBL:   AY305378
- PIR:   C35385
- RefSeq:   NP_942729.1
- ProteinModelPortal:   P22319
- GeneID:   2656816
- GenomeReviews:   AY305378_GR
- KEGG:   reh:PHG090
- HOGENOM:   HBG287961
- OMA:   ERCAIGF
- ProtClustDB:   CLSK893110
- BioCyc:   MetaCyc:HOXYALCA-MONOMER
- BioCyc:   REUT381666:PHG090-MONOMER
- BRENDA:   1.12.1.2
- GO:   GO:0005737
- InterPro:   IPR006137

Pfam domain/function: PF01058 Oxidored_q6

EC number: =1.12.1.2

Molecular weight: Translated: 22882; Mature: 22882

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPHKDEIASHELPATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLPLLE
CCCCCCHHHHCCCCCCCCCCCHHHCCCCCCEEEEEEECHHHHHHHHHHHCCHHHHHHHHH
KVTLLRSSLTDIKRIPERCAIGFVEGGVSSEENIETLEHFRENCDILISVGACAVWGGVP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHCCCH
AMRNVFELKDCLAEAYVNSATAVPGAKAVVPFHPDIPRITTKVYPCHEVVKMDYFIPGCP
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHCCCCHHHHHHHHCCCCCCC
PDGDAIFKVLDDLVNGRPFDLPSSINRYD
CCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRAPHKDEIASHELPATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLPLLE
CCCCCCHHHHCCCCCCCCCCCHHHCCCCCCEEEEEEECHHHHHHHHHHHCCHHHHHHHHH
KVTLLRSSLTDIKRIPERCAIGFVEGGVSSEENIETLEHFRENCDILISVGACAVWGGVP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHCCCH
AMRNVFELKDCLAEAYVNSATAVPGAKAVVPFHPDIPRITTKVYPCHEVVKMDYFIPGCP
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHCCCCHHHHHHHHCCCCCCC
PDGDAIFKVLDDLVNGRPFDLPSSINRYD
CCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2188945; 12948488; 2496982