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The map label for this gene is xerD [C]

Identifier: 38637702

GI number: 38637702

Start: 33310

End: 34254

Strand: Direct

Name: xerD [C]

Synonym: PHG037

Alternate gene names: 38637702

Gene position: 33310-34254 (Clockwise)

Preceding gene: 38637701

Following gene: 38637703

Centisome position: 7.37

GC content: 60.11

Gene sequence:

>945_bases
ATGAACACGCTGCGGCAGGCCGTTCAGGAGTATCTGGACCTCAGGCGGAGCCTGGGCTTCAAGCTGAGGGAGGCCGGCAA
GGCCTTGCCTGATTTCGTCGCGTTCATGGAGAGGCACCGTGCTTCCTTTATCACCCAGGCGTTGGCGCTCTTGTGGGCCC
AGCAACCTTCCAACGTCCAACCCGCCCGCTGGGCGAGCCGACTCAGTATCGTGCGCGAGTTTGCGCGTCATCGTAGTGCG
ACCGACCCACGCACACAGATTCCTGCACCGGGTCTGCTACCGTTTTCGCCGAAGCGGGCCCGACCATACCTATACTCGAG
CGACGAGATTCGCAGACTACTCCATGCTGCGCTTCAGATGCCCTGCCGCTTCGCGCGTGACGAACTGCAACCATGGACCT
ATTACTGCCTGTTTGGCTTGCTGAGTGTATCGGGAATGCGCCTGGGCGAAGCGCGCAATCTTGAGCTTCAGGACATCGAT
CTGACAGCGGCAATATTGACGATCCGCGGCGCCAAACTTGGCAAGTCCCGGTTCGTTCCACTGCATGCGTCGACCTGCAA
CGTGCTCGCGGACTATATTGCACGACGCAAACGTCATTGGGCGGGGCGACCCGTGTCCTCCTACTTGTTCGTGTCTAACC
AGGGCAACCGTCTGGATAGTGGCGAGATTCATCGACACTTCTATGCATTGTCCCGGCAGATCGGTCTGCGTGGCGCAGCC
GACAGTCACGGCCCACGTCTGCATGACATGAGGCACGTATTTGCGACGAATACGCTTTTACGCTGGTACCGTTCCGGACA
GGACCCCGAGCGCCGCCTGCCCATCCTGTCAGCTTACCTCGGTCATGTCCACATCGAGGATACGCAGTGGTATCTGAACG
CCTCGCCGGAGCTGATGCGCGAGGCGATGCGCCGGCTCGAACAGCGCTGGGAGATTCAACCATGA

Upstream 100 bases:

>100_bases
AGTTGTTGGGACACCATCATCCACAGACCACGTCGATCTACACGAAGGTCGACATCAAGGCATTGCGTACGCTGGCCGTA
CCGTGGCCGGGAGGTGTGCG

Downstream 100 bases:

>100_bases
CTACTACCGCCAGTCTCGCTCCGTTGCTGGAGCGTTTCTTTACGCAACGCCTGATGCAGCAGCGCCAGGCGAGTCCCCAC
ACGATTAGTTCCTATCGCGA

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MNTLRQAVQEYLDLRRSLGFKLREAGKALPDFVAFMERHRASFITQALALLWAQQPSNVQPARWASRLSIVREFARHRSA
TDPRTQIPAPGLLPFSPKRARPYLYSSDEIRRLLHAALQMPCRFARDELQPWTYYCLFGLLSVSGMRLGEARNLELQDID
LTAAILTIRGAKLGKSRFVPLHASTCNVLADYIARRKRHWAGRPVSSYLFVSNQGNRLDSGEIHRHFYALSRQIGLRGAA
DSHGPRLHDMRHVFATNTLLRWYRSGQDPERRLPILSAYLGHVHIEDTQWYLNASPELMREAMRRLEQRWEIQP

Sequences:

>Translated_314_residues
MNTLRQAVQEYLDLRRSLGFKLREAGKALPDFVAFMERHRASFITQALALLWAQQPSNVQPARWASRLSIVREFARHRSA
TDPRTQIPAPGLLPFSPKRARPYLYSSDEIRRLLHAALQMPCRFARDELQPWTYYCLFGLLSVSGMRLGEARNLELQDID
LTAAILTIRGAKLGKSRFVPLHASTCNVLADYIARRKRHWAGRPVSSYLFVSNQGNRLDSGEIHRHFYALSRQIGLRGAA
DSHGPRLHDMRHVFATNTLLRWYRSGQDPERRLPILSAYLGHVHIEDTQWYLNASPELMREAMRRLEQRWEIQP
>Mature_314_residues
MNTLRQAVQEYLDLRRSLGFKLREAGKALPDFVAFMERHRASFITQALALLWAQQPSNVQPARWASRLSIVREFARHRSA
TDPRTQIPAPGLLPFSPKRARPYLYSSDEIRRLLHAALQMPCRFARDELQPWTYYCLFGLLSVSGMRLGEARNLELQDID
LTAAILTIRGAKLGKSRFVPLHASTCNVLADYIARRKRHWAGRPVSSYLFVSNQGNRLDSGEIHRHFYALSRQIGLRGAA
DSHGPRLHDMRHVFATNTLLRWYRSGQDPERRLPILSAYLGHVHIEDTQWYLNASPELMREAMRRLEQRWEIQP

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36333; Mature: 36333

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLRQAVQEYLDLRRSLGFKLREAGKALPDFVAFMERHRASFITQALALLWAQQPSNVQ
CCHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PARWASRLSIVREFARHRSATDPRTQIPAPGLLPFSPKRARPYLYSSDEIRRLLHAALQM
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
PCRFARDELQPWTYYCLFGLLSVSGMRLGEARNLELQDIDLTAAILTIRGAKLGKSRFVP
CHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEE
LHASTCNVLADYIARRKRHWAGRPVSSYLFVSNQGNRLDSGEIHRHFYALSRQIGLRGAA
ECHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
DSHGPRLHDMRHVFATNTLLRWYRSGQDPERRLPILSAYLGHVHIEDTQWYLNASPELMR
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCEEEECCCHHHHH
EAMRRLEQRWEIQP
HHHHHHHHHCCCCC
>Mature Secondary Structure
MNTLRQAVQEYLDLRRSLGFKLREAGKALPDFVAFMERHRASFITQALALLWAQQPSNVQ
CCHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PARWASRLSIVREFARHRSATDPRTQIPAPGLLPFSPKRARPYLYSSDEIRRLLHAALQM
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
PCRFARDELQPWTYYCLFGLLSVSGMRLGEARNLELQDIDLTAAILTIRGAKLGKSRFVP
CHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEE
LHASTCNVLADYIARRKRHWAGRPVSSYLFVSNQGNRLDSGEIHRHFYALSRQIGLRGAA
ECHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
DSHGPRLHDMRHVFATNTLLRWYRSGQDPERRLPILSAYLGHVHIEDTQWYLNASPELMR
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCEEEECCCHHHHH
EAMRRLEQRWEIQP
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]