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The map label for this gene is xerD [C]

Identifier: 38637701

GI number: 38637701

Start: 32312

End: 33313

Strand: Direct

Name: xerD [C]

Synonym: PHG036

Alternate gene names: 38637701

Gene position: 32312-33313 (Clockwise)

Preceding gene: 38637700

Following gene: 38637702

Centisome position: 7.15

GC content: 60.28

Gene sequence:

>1002_bases
GTGCGACCGGGTCCGGGAGATCGTGCTGCGCTCAAGCATCTCATTGCTTTTCTCGATCGTGAGAGGCTGATTCCGGCGCA
GAGGACGCCCGCGCGTCGGCTGACCCCGGTTGAGTCCTGTACCCTGGCTTACGTTGAGTATCTTCGCGAGGTGCGCGCCC
TGTCCAAGGCGACGATCATCAACTACACGCCGTTCATCAGGGAGTTTCTCGAAGATTGTTTTGGTGACCGGCGCGTCAGG
CTTTCGCGTTTGCGTGCCGGCGATGTCGTGAACTTTGTGCAATTTCAGGCACAGCATCTGCATCTGAAGCGCGCGAAGCT
CATGACGGCAGCGCTGCGATCCTTCCTACGTTACGCGTGCTATCGGGGCGACATGACGCTCGATCTGGCCGCCGCTGTTC
CCGTGGTGGCCAACTGGTCGATGCAGTCCATCCCTCGCGGGATTCCCCCAGAGCAGATACAGGAACTGCTGGTCAGTATC
GATCGACGGACTGCCGTTGGTCGTCGTGATTACGCCATCATCCTGCTACTCGCGCGCCTGGGACTGCGTTCTGGGGAAGT
GGCATTTCTCGACCTCGACGATATTGACTGGAACACAGGAGTTTTAAGCGTGCGCGGCAAGAGTGGCCTGCGTAACGGGC
TGCCTTTGCCCGCCGATGTTGGCAAGGCGATTGCAGCGTACCTTCGCTACGGGCGACCGCAGAGCACGAGTCGCCGTGTA
TTTTTGCGTGCGAAGGCGCCTTTCACCGGCTTTCGTAGTGCGTGTGGCGTGGGCTCCATCGTTCGGCATTCGCTCCAGCG
CGCCGGTATCAACGCCCCAACCACTGGGGCACACCAGTTTCGTCATGCACTGGCCAGCCAGATGCTCCGTCACGGCGCGT
CACTCCGTGAGATTGGTGAGTTGTTGGGACACCATCATCCACAGACCACGTCGATCTACACGAAGGTCGACATCAAGGCA
TTGCGTACGCTGGCCGTACCGTGGCCGGGAGGTGTGCGATGA

Upstream 100 bases:

>100_bases
CGTTGCAGGTTTTAGCCGCTGGCTCGGTCGAAACGGAATTGACTTGCGTAATGTCTGTCCTGATCAAGCGGCGCGTTACT
TACGTTAACGCGCGCGGCAC

Downstream 100 bases:

>100_bases
ACACGCTGCGGCAGGCCGTTCAGGAGTATCTGGACCTCAGGCGGAGCCTGGGCTTCAAGCTGAGGGAGGCCGGCAAGGCC
TTGCCTGATTTCGTCGCGTT

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MRPGPGDRAALKHLIAFLDRERLIPAQRTPARRLTPVESCTLAYVEYLREVRALSKATIINYTPFIREFLEDCFGDRRVR
LSRLRAGDVVNFVQFQAQHLHLKRAKLMTAALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQELLVSI
DRRTAVGRRDYAIILLLARLGLRSGEVAFLDLDDIDWNTGVLSVRGKSGLRNGLPLPADVGKAIAAYLRYGRPQSTSRRV
FLRAKAPFTGFRSACGVGSIVRHSLQRAGINAPTTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIKA
LRTLAVPWPGGVR

Sequences:

>Translated_333_residues
MRPGPGDRAALKHLIAFLDRERLIPAQRTPARRLTPVESCTLAYVEYLREVRALSKATIINYTPFIREFLEDCFGDRRVR
LSRLRAGDVVNFVQFQAQHLHLKRAKLMTAALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQELLVSI
DRRTAVGRRDYAIILLLARLGLRSGEVAFLDLDDIDWNTGVLSVRGKSGLRNGLPLPADVGKAIAAYLRYGRPQSTSRRV
FLRAKAPFTGFRSACGVGSIVRHSLQRAGINAPTTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIKA
LRTLAVPWPGGVR
>Mature_333_residues
MRPGPGDRAALKHLIAFLDRERLIPAQRTPARRLTPVESCTLAYVEYLREVRALSKATIINYTPFIREFLEDCFGDRRVR
LSRLRAGDVVNFVQFQAQHLHLKRAKLMTAALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQELLVSI
DRRTAVGRRDYAIILLLARLGLRSGEVAFLDLDDIDWNTGVLSVRGKSGLRNGLPLPADVGKAIAAYLRYGRPQSTSRRV
FLRAKAPFTGFRSACGVGSIVRHSLQRAGINAPTTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIKA
LRTLAVPWPGGVR

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=186, Percent_Identity=31.7204301075269, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37126; Mature: 37126

Theoretical pI: Translated: 11.42; Mature: 11.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPGPGDRAALKHLIAFLDRERLIPAQRTPARRLTPVESCTLAYVEYLREVRALSKATII
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
NYTPFIREFLEDCFGDRRVRLSRLRAGDVVNFVQFQAQHLHLKRAKLMTAALRSFLRYAC
CCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQELLVSIDRRTAVGRRDYAIILLLARL
HCCCCEEEHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GLRSGEVAFLDLDDIDWNTGVLSVRGKSGLRNGLPLPADVGKAIAAYLRYGRPQSTSRRV
CCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
FLRAKAPFTGFRSACGVGSIVRHSLQRAGINAPTTGAHQFRHALASQMLRHGASLREIGE
EEEECCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
LLGHHHPQTTSIYTKVDIKALRTLAVPWPGGVR
HHCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRPGPGDRAALKHLIAFLDRERLIPAQRTPARRLTPVESCTLAYVEYLREVRALSKATII
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
NYTPFIREFLEDCFGDRRVRLSRLRAGDVVNFVQFQAQHLHLKRAKLMTAALRSFLRYAC
CCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQELLVSIDRRTAVGRRDYAIILLLARL
HCCCCEEEHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GLRSGEVAFLDLDDIDWNTGVLSVRGKSGLRNGLPLPADVGKAIAAYLRYGRPQSTSRRV
CCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
FLRAKAPFTGFRSACGVGSIVRHSLQRAGINAPTTGAHQFRHALASQMLRHGASLREIGE
EEEECCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
LLGHHHPQTTSIYTKVDIKALRTLAVPWPGGVR
HHCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]