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The map label for this gene is ybeY [C]

Identifier: 38234288

GI number: 38234288

Start: 1754004

End: 1754594

Strand: Reverse

Name: ybeY [C]

Synonym: DIP1717

Alternate gene names: 38234288

Gene position: 1754594-1754004 (Counterclockwise)

Preceding gene: 38234289

Following gene: 38234287

Centisome position: 70.5

GC content: 56.01

Gene sequence:

>591_bases
ATGAGTATCGAAGTTGTTAACGAATCTGGCTTCGACGGCGTTAACGAAGAAGCGCTTATCGACGTCGCCACGTTCGTGCT
CGGCGAGATGGATGTGCACCCTGACGCCGAAGCCACCATCTCCGTCGTTGACGTTGCCACTATGAGCGATCTTCACGTGC
GCTGGATGGACCTAGAAGGGCCAACCGACGTAATGAGTTTCCCCATGGACGAACTAACCCCAGGCATGGGGCGCCCCGAC
GCTCAACCTTTTGGGCCCGCGATGCTCGGCGACATAATTTTGTGCCCCGAATTTGCAGCTAAGCAAGCAGCCAAGGCCGG
CCATGATATGGGGCATGAATTGGCACTTTTAACCACTCATGGCTGCCTGCACTTGCTAGGGTATGACCACATCGAGCCGG
AAGACGAGCAAGAAATGTTTGCCCTGCAGAATGAGTTGCTGCAGGACTGGTACACCTACTGTGCACGTCGTGGCGTGGAA
TTCCAGCCAAAACCGAGCAACGCAGGGGCATTCCCTTCTGCTGCTGACCGTGCAGAACTAGACAAACTTGTACCAGGCGG
CGGCATTCCGGCTATTGGGGAACCGCAGTGA

Upstream 100 bases:

>100_bases
CTTTGCCGAGCTTGGTTCGGACGATGTGGTTCGCCACCAACTTGTGGGCCGGATCGTTGATGCATATGACGCCTATGAAG
AACAACTAAAGGACAAATAA

Downstream 100 bases:

>100_bases
GCCCTGTAGTTTTAGGGCTGATTACCCTTGCTGCTTTGTTGTGTTCAGGATTGCTAGGAACCGTCGAAGCGGCAGTCAGC
TCCATTTCGCTTGCTCGAGT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MSIEVVNESGFDGVNEEALIDVATFVLGEMDVHPDAEATISVVDVATMSDLHVRWMDLEGPTDVMSFPMDELTPGMGRPD
AQPFGPAMLGDIILCPEFAAKQAAKAGHDMGHELALLTTHGCLHLLGYDHIEPEDEQEMFALQNELLQDWYTYCARRGVE
FQPKPSNAGAFPSAADRAELDKLVPGGGIPAIGEPQ

Sequences:

>Translated_196_residues
MSIEVVNESGFDGVNEEALIDVATFVLGEMDVHPDAEATISVVDVATMSDLHVRWMDLEGPTDVMSFPMDELTPGMGRPD
AQPFGPAMLGDIILCPEFAAKQAAKAGHDMGHELALLTTHGCLHLLGYDHIEPEDEQEMFALQNELLQDWYTYCARRGVE
FQPKPSNAGAFPSAADRAELDKLVPGGGIPAIGEPQ
>Mature_195_residues
SIEVVNESGFDGVNEEALIDVATFVLGEMDVHPDAEATISVVDVATMSDLHVRWMDLEGPTDVMSFPMDELTPGMGRPDA
QPFGPAMLGDIILCPEFAAKQAAKAGHDMGHELALLTTHGCLHLLGYDHIEPEDEQEMFALQNELLQDWYTYCARRGVEF
QPKPSNAGAFPSAADRAELDKLVPGGGIPAIGEPQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=113, Percent_Identity=38.0530973451327, Blast_Score=70, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CORDI (Q6NG17)

Other databases:

- EMBL:   BX248359
- RefSeq:   NP_940055.1
- ProteinModelPortal:   Q6NG17
- SMR:   Q6NG17
- GeneID:   2650310
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1717
- NMPDR:   fig|257309.1.peg.1646
- HOGENOM:   HBG734136
- OMA:   PPDEATH
- PhylomeDB:   Q6NG17
- ProtClustDB:   PRK00016
- BioCyc:   CDIP257309:DIP1717-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 21192; Mature: 21061

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEVVNESGFDGVNEEALIDVATFVLGEMDVHPDAEATISVVDVATMSDLHVRWMDLEG
CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHCCCEEEEEECCC
PTDVMSFPMDELTPGMGRPDAQPFGPAMLGDIILCPEFAAKQAAKAGHDMGHELALLTTH
CHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHEEECCCHHHHHHHHHCCCCCCEEEEEEHH
GCLHLLGYDHIEPEDEQEMFALQNELLQDWYTYCARRGVEFQPKPSNAGAFPSAADRAEL
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
DKLVPGGGIPAIGEPQ
HHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SIEVVNESGFDGVNEEALIDVATFVLGEMDVHPDAEATISVVDVATMSDLHVRWMDLEG
EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHCCCEEEEEECCC
PTDVMSFPMDELTPGMGRPDAQPFGPAMLGDIILCPEFAAKQAAKAGHDMGHELALLTTH
CHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHEEECCCHHHHHHHHHCCCCCCEEEEEEHH
GCLHLLGYDHIEPEDEQEMFALQNELLQDWYTYCARRGVEFQPKPSNAGAFPSAADRAEL
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
DKLVPGGGIPAIGEPQ
HHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910