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The map label for this gene is recO [H]

Identifier: 38234284

GI number: 38234284

Start: 1750120

End: 1750848

Strand: Reverse

Name: recO [H]

Synonym: DIP1713

Alternate gene names: 38234284

Gene position: 1750848-1750120 (Counterclockwise)

Preceding gene: 38234285

Following gene: 38234283

Centisome position: 70.35

GC content: 54.05

Gene sequence:

>729_bases
GTGCGTCGAGAAAGTTATAGGGAGCGAGCCCTTGTGGTTCGCTCCTACGACTTTGGTGAGGCAGACCGCATCATAGTGCT
TTTTACCCGCGGTCGTGGCATCGTGCGCGGTGTTGCTAAGGGCGTGCGTCGGGCAAAAAGTCGATTTGGTTCACGGCTAC
AACCCTTTGTTGAGCTAGACGTTCAGCTCTATCGTGGACGTAATCTGGAGTCCATTACAGCAGCCGATACCGTGGCATAC
TTCGGGGCTAAGATCATTGATGATGTCACACGCTTTTCTGCTGCCAGCTCGATCTTGGAGGGCGTCGAAAAGCTCGCGGT
AGGAGACGAGCCTCGTCTTTTTGATCTCACCGTCACAGCGCTGAAAAACATGCAGTCTTGTGCGCATCCTGTCGCTGAAG
TAGACACTTTCTTACTTCAAGGAATGAACATTGCTGGTTGGGCACCCAGCCTGTTTGATTGTGCACAATGCGGGGCATCA
GGTCCACATCATGCATTTCATCCCAGCCCAGGTGGGGCAGTGTGCGTGCATTGCCGCCCCCTAGGTGCGCAAGAAGTAGA
CCCAGAAACCCTCCATATGATGTGGCTGATGGCCCAAGGGCACCGTGATGCAGTAGCCGAAATTGGTACACCGGAGCGCT
ATCAACAAGCCCATGCACTCATCCGATCCCATTTGTCATGGCATGTGGAACGCGGTCTTGCCAGCCTCAATGTGCTTGAC
CAAGTGTGA

Upstream 100 bases:

>100_bases
TCATCAAGATTTTGGGAAGCAATGTGTACTTGGATCTTCGTATCAAGGTGCTCAAGAACTGGCAGCAGGATCCAAAGCAG
CTAGGCCGACTAGGGTTCTA

Downstream 100 bases:

>100_bases
TAGTGGCAGAATAGTCGGGGTGACCAAGCAACTCGTACCTCCACAGATTCCGCAAGAGTTCCTCCCGCGGCACATCGCGC
TCGTCATGGACGGCAACGGA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MRRESYRERALVVRSYDFGEADRIIVLFTRGRGIVRGVAKGVRRAKSRFGSRLQPFVELDVQLYRGRNLESITAADTVAY
FGAKIIDDVTRFSAASSILEGVEKLAVGDEPRLFDLTVTALKNMQSCAHPVAEVDTFLLQGMNIAGWAPSLFDCAQCGAS
GPHHAFHPSPGGAVCVHCRPLGAQEVDPETLHMMWLMAQGHRDAVAEIGTPERYQQAHALIRSHLSWHVERGLASLNVLD
QV

Sequences:

>Translated_242_residues
MRRESYRERALVVRSYDFGEADRIIVLFTRGRGIVRGVAKGVRRAKSRFGSRLQPFVELDVQLYRGRNLESITAADTVAY
FGAKIIDDVTRFSAASSILEGVEKLAVGDEPRLFDLTVTALKNMQSCAHPVAEVDTFLLQGMNIAGWAPSLFDCAQCGAS
GPHHAFHPSPGGAVCVHCRPLGAQEVDPETLHMMWLMAQGHRDAVAEIGTPERYQQAHALIRSHLSWHVERGLASLNVLD
QV
>Mature_242_residues
MRRESYRERALVVRSYDFGEADRIIVLFTRGRGIVRGVAKGVRRAKSRFGSRLQPFVELDVQLYRGRNLESITAADTVAY
FGAKIIDDVTRFSAASSILEGVEKLAVGDEPRLFDLTVTALKNMQSCAHPVAEVDTFLLQGMNIAGWAPSLFDCAQCGAS
GPHHAFHPSPGGAVCVHCRPLGAQEVDPETLHMMWLMAQGHRDAVAEIGTPERYQQAHALIRSHLSWHVERGLASLNVLD
QV

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 26707; Mature: 26707

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRESYRERALVVRSYDFGEADRIIVLFTRGRGIVRGVAKGVRRAKSRFGSRLQPFVELD
CCCHHHHHHEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VQLYRGRNLESITAADTVAYFGAKIIDDVTRFSAASSILEGVEKLAVGDEPRLFDLTVTA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHH
LKNMQSCAHPVAEVDTFLLQGMNIAGWAPSLFDCAQCGASGPHHAFHPSPGGAVCVHCRP
HHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEC
LGAQEVDPETLHMMWLMAQGHRDAVAEIGTPERYQQAHALIRSHLSWHVERGLASLNVLD
CCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QV
CC
>Mature Secondary Structure
MRRESYRERALVVRSYDFGEADRIIVLFTRGRGIVRGVAKGVRRAKSRFGSRLQPFVELD
CCCHHHHHHEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VQLYRGRNLESITAADTVAYFGAKIIDDVTRFSAASSILEGVEKLAVGDEPRLFDLTVTA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHH
LKNMQSCAHPVAEVDTFLLQGMNIAGWAPSLFDCAQCGASGPHHAFHPSPGGAVCVHCRP
HHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEC
LGAQEVDPETLHMMWLMAQGHRDAVAEIGTPERYQQAHALIRSHLSWHVERGLASLNVLD
CCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA