BacMap

Definition	Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome.
Accession	NC_002935
Length	2,488,635

Click here to switch to the map view.

The map label for this gene is ylmA [H]

Identifier: 38233661

GI number: 38233661

Start: 1048145

End: 1049014

Strand: Direct

Name: ylmA [H]

Synonym: DIP1067

Alternate gene names: 38233661

Gene position: 1048145-1049014 (Clockwise)

Preceding gene: 38233658

Following gene: 38233662

Centisome position: 42.12

GC content: 53.68

Gene sequence:

>870_bases
ATGCACAGTGAGAAATCCGTCATGATGGAACCTATGACGAACCCGAAGAATGATCCGCGTAACCCCGATCTCCTTCTCGA
TTTTGAAGAGGTTGAGTTCACTCGGGGCGGAAAAACGCTGGTAGGGCCTATCACCTGGCAAGTCGAATTGGATGAGCGGT
GGGTGATCCTCGGACCAAATGGTGCGGGCAAGACCACACTCATTCGGATGGCGGCTGCCGAAGAATTCCCCTCAAAAGGT
GCATTGTGGATCATGGGGGAACGCATCGGTAAAACAGATATGCGTGATTTGCGAGCGATGATCGGTGTTTCTTCGTCAGC
GTTAGGAAACCGAATTCCTACCAACGAAAAAGTCCTTGATCTCGTGATCTCGGCAGGGTACGCCATCTTGGGACGGTGGC
GCGAAGAATACGACAAATGGGATCACGATCGCGCCATTGAGATCCTAGAACAAGTCGGTGCGTACCACCTAGCAGATCAA
ACATGGGGGACGTTAAGCGAAGGTGAGCGAAAACGAGTCCTAGTTGCTCGCGCTCTTATGACCAACCCCGAGCTCTTGCT
TCTCGACGAACCCACCGCAGGCATGGACCTAGGTGGCAGAGAGGACCTCGTGGGATACCTTGCTCAACTAGCAATGGATC
CCGACGCACCGGCGATGGTCATGATTACGCACCATGTAGAGGAGATTCCCGCAGGTTTTACTCACGCACTACTCCTAGAC
GAAGGCGAAGTAGTCTCCCAAGGGCTTATCGACGAAGTCCTTACCAGTGCAAACCTCACCAAGGCATTCCATCAGCCCAT
CAAAGTAGACAAGATCGATGGCCGTTATTTCGCGCGCCGTCAGCGCACTGCCCGTAGTCACCGTCGCTAG

Upstream 100 bases:

>100_bases
ACTCATATGCCGATTCCTCTATGCGTAGGGGACTGTTCACTGTCGGGAAAATCCTTCCCGAGCCTTGTCTCTTAGAGTAG
TCAAGCTGTGTCTATTCCAC

Downstream 100 bases:

>100_bases
CGGACTCTCGACAAATCAAACACGCTGTAGAATATCTTGCGACTACGCCGGACTTGGGAATCGAGGTGAGCAACCCCCAT
GAGTACACCAGTGGACCTCA

Product: ABC transporter ATP-binding protein

Products: ADP; phosphate; ferric enterobactin [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MHSEKSVMMEPMTNPKNDPRNPDLLLDFEEVEFTRGGKTLVGPITWQVELDERWVILGPNGAGKTTLIRMAAAEEFPSKG
ALWIMGERIGKTDMRDLRAMIGVSSSALGNRIPTNEKVLDLVISAGYAILGRWREEYDKWDHDRAIEILEQVGAYHLADQ
TWGTLSEGERKRVLVARALMTNPELLLLDEPTAGMDLGGREDLVGYLAQLAMDPDAPAMVMITHHVEEIPAGFTHALLLD
EGEVVSQGLIDEVLTSANLTKAFHQPIKVDKIDGRYFARRQRTARSHRR

Sequences:

>Translated_289_residues
MHSEKSVMMEPMTNPKNDPRNPDLLLDFEEVEFTRGGKTLVGPITWQVELDERWVILGPNGAGKTTLIRMAAAEEFPSKG
ALWIMGERIGKTDMRDLRAMIGVSSSALGNRIPTNEKVLDLVISAGYAILGRWREEYDKWDHDRAIEILEQVGAYHLADQ
TWGTLSEGERKRVLVARALMTNPELLLLDEPTAGMDLGGREDLVGYLAQLAMDPDAPAMVMITHHVEEIPAGFTHALLLD
EGEVVSQGLIDEVLTSANLTKAFHQPIKVDKIDGRYFARRQRTARSHRR
>Mature_289_residues
MHSEKSVMMEPMTNPKNDPRNPDLLLDFEEVEFTRGGKTLVGPITWQVELDERWVILGPNGAGKTTLIRMAAAEEFPSKG
ALWIMGERIGKTDMRDLRAMIGVSSSALGNRIPTNEKVLDLVISAGYAILGRWREEYDKWDHDRAIEILEQVGAYHLADQ
TWGTLSEGERKRVLVARALMTNPELLLLDEPTAGMDLGGREDLVGYLAQLAMDPDAPAMVMITHHVEEIPAGFTHALLLD
EGEVVSQGLIDEVLTSANLTKAFHQPIKVDKIDGRYFARRQRTARSHRR

Specific function: Part Of The Binding-Protein-Dependent Transport System For Ferric Enterobactin. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG1119

COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI46592978, Length=288, Percent_Identity=26.3888888888889, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI46592915, Length=242, Percent_Identity=27.6859504132231, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI46592964, Length=288, Percent_Identity=26.3888888888889, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI46592956, Length=288, Percent_Identity=26.3888888888889, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI46592971, Length=288, Percent_Identity=26.3888888888889, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI46592898, Length=288, Percent_Identity=26.3888888888889, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI42490749, Length=257, Percent_Identity=25.2918287937743, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27881501, Length=189, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI30795238, Length=189, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI9961250, Length=258, Percent_Identity=24.8062015503876, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4505771, Length=258, Percent_Identity=24.8062015503876, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9961252, Length=258, Percent_Identity=24.8062015503876, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1786803, Length=238, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786975, Length=227, Percent_Identity=29.0748898678414, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=31.858407079646, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786319, Length=211, Percent_Identity=29.8578199052133, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=26.7543859649123, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788165, Length=222, Percent_Identity=30.6306306306306, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788225, Length=220, Percent_Identity=30.9090909090909, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081709, Length=213, Percent_Identity=28.169014084507, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787029, Length=226, Percent_Identity=27.4336283185841, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789593, Length=232, Percent_Identity=29.3103448275862, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789672, Length=247, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789032, Length=246, Percent_Identity=28.4552845528455, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786345, Length=252, Percent_Identity=23.4126984126984, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788897, Length=205, Percent_Identity=27.3170731707317, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786872, Length=191, Percent_Identity=26.7015706806283, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786398, Length=235, Percent_Identity=25.1063829787234, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081834, Length=184, Percent_Identity=27.7173913043478, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790467, Length=205, Percent_Identity=28.2926829268293, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790739, Length=238, Percent_Identity=23.9495798319328, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788644, Length=199, Percent_Identity=28.1407035175879, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788053, Length=195, Percent_Identity=27.6923076923077, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081791, Length=236, Percent_Identity=26.6949152542373, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787112, Length=271, Percent_Identity=27.6752767527675, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790544, Length=161, Percent_Identity=32.2981366459627, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=27.4336283185841, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082267, Length=186, Percent_Identity=30.1075268817204, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787547, Length=231, Percent_Identity=25.5411255411255, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI48994997, Length=211, Percent_Identity=28.9099526066351, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789891, Length=229, Percent_Identity=25.3275109170306, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789864, Length=243, Percent_Identity=22.2222222222222, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI48994943, Length=252, Percent_Identity=25, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789962, Length=221, Percent_Identity=22.1719457013575, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788506, Length=227, Percent_Identity=26.8722466960352, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87081782, Length=220, Percent_Identity=27.2727272727273, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=245, Percent_Identity=26.9387755102041, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=245, Percent_Identity=26.9387755102041, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=245, Percent_Identity=26.9387755102041, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=220, Percent_Identity=26.8181818181818, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17552010, Length=209, Percent_Identity=29.6650717703349, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=174, Percent_Identity=28.1609195402299, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115532730, Length=197, Percent_Identity=25.3807106598985, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=272, Percent_Identity=21.3235294117647, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320266, Length=238, Percent_Identity=28.1512605042017, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161076684, Length=260, Percent_Identity=25.7692307692308, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24581617, Length=260, Percent_Identity=25.7692307692308, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24581615, Length=260, Percent_Identity=25.7692307692308, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI161076682, Length=238, Percent_Identity=26.890756302521, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28574744, Length=221, Percent_Identity=27.6018099547511, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85724858, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85724856, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580547, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580551, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580549, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580545, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21357907, Length=235, Percent_Identity=27.2340425531915, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 32350; Mature: 32350

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSEKSVMMEPMTNPKNDPRNPDLLLDFEEVEFTRGGKTLVGPITWQVELDERWVILGPN
CCCCCCEEECCCCCCCCCCCCCCEEEEHHHHEEECCCCEEEEEEEEEEEECCEEEEECCC
GAGKTTLIRMAAAEEFPSKGALWIMGERIGKTDMRDLRAMIGVSSSALGNRIPTNEKVLD
CCCCHHEEEEHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHH
LVISAGYAILGRWREEYDKWDHDRAIEILEQVGAYHLADQTWGTLSEGERKRVLVARALM
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHH
TNPELLLLDEPTAGMDLGGREDLVGYLAQLAMDPDAPAMVMITHHVEEIPAGFTHALLLD
CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCEEEEEEC
EGEVVSQGLIDEVLTSANLTKAFHQPIKVDKIDGRYFARRQRTARSHRR
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHSEKSVMMEPMTNPKNDPRNPDLLLDFEEVEFTRGGKTLVGPITWQVELDERWVILGPN
CCCCCCEEECCCCCCCCCCCCCCEEEEHHHHEEECCCCEEEEEEEEEEEECCEEEEECCC
GAGKTTLIRMAAAEEFPSKGALWIMGERIGKTDMRDLRAMIGVSSSALGNRIPTNEKVLD
CCCCHHEEEEHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHH
LVISAGYAILGRWREEYDKWDHDRAIEILEQVGAYHLADQTWGTLSEGERKRVLVARALM
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHH
TNPELLLLDEPTAGMDLGGREDLVGYLAQLAMDPDAPAMVMITHHVEEIPAGFTHALLLD
CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCEEEEEEC
EGEVVSQGLIDEVLTSANLTKAFHQPIKVDKIDGRYFARRQRTARSHRR
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ferric enterobactin [Periplasm]; H2O [C]

Specific reaction: ATP + ferric enterobactin [Periplasm] + H2O = ADP + phosphate + ferric enterobactin [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]