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The map label for this gene is rfbD [H]

Identifier: 38232800

GI number: 38232800

Start: 147137

End: 147997

Strand: Reverse

Name: rfbD [H]

Synonym: DIP0175

Alternate gene names: 38232800

Gene position: 147997-147137 (Counterclockwise)

Preceding gene: 38232802

Following gene: 38232799

Centisome position: 5.95

GC content: 61.32

Gene sequence:

>861_bases
ATGGTAGCCCGTATTACCAACACGGACACCACCGCCGACGAGCCGTCGCAATCCAAGACACTCGCAGCCGCCTGGGCAGA
CCTCGTTCGGGGCTTCTCCCAGCGGGAACTCTGGCTCCAACTGGGTTGGCAGGACATCAAGCAGCGCTACCGTCGCTCCG
TGCTCGGCCCCCTATGGATCACCATCGCCACCGGTGTGATGGCACTCGCCCTCGGCCTGCTGTACTCCGTGCTCTTCAAG
ATCCCCGTCGCCCAATTCCTCCCCCACGTCACTGTGGGATTAATCATGTGGAACTTCATCGCGGGATGCATTAAGGAAGG
CTCCGAAGTCTTCATCGCCAACGAAGGCCTGATCAAACAGCTGCCCTCCGCGCTCTCCGTCCACGTCTACCGCCTGGTCT
GGAAACAAACCCTCTTCCTCATGCACAACATGGTGATCTGGGTCATCCTCATGGCGATCTTCCCACGGCCGCTCGGCTGG
GACATCCTCCTCGGAATCCCCGCCCTCGCCCTGCTGATCGCCAACGGCGTATGGGTCACCATGTTCTTCGGCATCGTCGC
CACCCGCTACCGCGACTTCTCGCCGCTGCTCGAAGCACTCACCCAGCTCCTGTTCTACGTCACCCCCATCGTGTGGACCA
CCGAAACGCTTTACTCCCAAGGCGGTGCCGTCTCCGAACGCGCCAAACTGGCCATGCTCAACCCCCTGTACCACTACATG
GAAGTCATCCGCGCCCCCTTGATCGGCGCCCCCATCCACCCCCTGAACTGGATCGTGGTGGGCTGCTGCACCGTCATCGG
GCTTTTCATCGCCATGCTTGCCATGCGCCAATGGCGATTCCGCGTCAGCTACTGGGTTTAA

Upstream 100 bases:

>100_bases
GTTAGTATGCCTGTCAGATTCAATCCCCGCACAAAGCCAGCTAGGCTTAACATTTGTGCAGGAACAAGCTGAACGTCATA
ACAACGAGACACTCGAAGAG

Downstream 100 bases:

>100_bases
GAAGGAGAAGAACTCACCATGGTATCTATCGACACCTATAACGCCTGCGTTGACTTCCCCATCTTCGACGCCAAATCGCG
CTCCATGAAAAAAGCATTCC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MVARITNTDTTADEPSQSKTLAAAWADLVRGFSQRELWLQLGWQDIKQRYRRSVLGPLWITIATGVMALALGLLYSVLFK
IPVAQFLPHVTVGLIMWNFIAGCIKEGSEVFIANEGLIKQLPSALSVHVYRLVWKQTLFLMHNMVIWVILMAIFPRPLGW
DILLGIPALALLIANGVWVTMFFGIVATRYRDFSPLLEALTQLLFYVTPIVWTTETLYSQGGAVSERAKLAMLNPLYHYM
EVIRAPLIGAPIHPLNWIVVGCCTVIGLFIAMLAMRQWRFRVSYWV

Sequences:

>Translated_286_residues
MVARITNTDTTADEPSQSKTLAAAWADLVRGFSQRELWLQLGWQDIKQRYRRSVLGPLWITIATGVMALALGLLYSVLFK
IPVAQFLPHVTVGLIMWNFIAGCIKEGSEVFIANEGLIKQLPSALSVHVYRLVWKQTLFLMHNMVIWVILMAIFPRPLGW
DILLGIPALALLIANGVWVTMFFGIVATRYRDFSPLLEALTQLLFYVTPIVWTTETLYSQGGAVSERAKLAMLNPLYHYM
EVIRAPLIGAPIHPLNWIVVGCCTVIGLFIAMLAMRQWRFRVSYWV
>Mature_286_residues
MVARITNTDTTADEPSQSKTLAAAWADLVRGFSQRELWLQLGWQDIKQRYRRSVLGPLWITIATGVMALALGLLYSVLFK
IPVAQFLPHVTVGLIMWNFIAGCIKEGSEVFIANEGLIKQLPSALSVHVYRLVWKQTLFLMHNMVIWVILMAIFPRPLGW
DILLGIPALALLIANGVWVTMFFGIVATRYRDFSPLLEALTQLLFYVTPIVWTTETLYSQGGAVSERAKLAMLNPLYHYM
EVIRAPLIGAPIHPLNWIVVGCCTVIGLFIAMLAMRQWRFRVSYWV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 32378; Mature: 32378

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVARITNTDTTADEPSQSKTLAAAWADLVRGFSQRELWLQLGWQDIKQRYRRSVLGPLWI
CCEEECCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
TIATGVMALALGLLYSVLFKIPVAQFLPHVTVGLIMWNFIAGCIKEGSEVFIANEGLIKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
LPSALSVHVYRLVWKQTLFLMHNMVIWVILMAIFPRPLGWDILLGIPALALLIANGVWVT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHH
MFFGIVATRYRDFSPLLEALTQLLFYVTPIVWTTETLYSQGGAVSERAKLAMLNPLYHYM
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
EVIRAPLIGAPIHPLNWIVVGCCTVIGLFIAMLAMRQWRFRVSYWV
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVARITNTDTTADEPSQSKTLAAAWADLVRGFSQRELWLQLGWQDIKQRYRRSVLGPLWI
CCEEECCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
TIATGVMALALGLLYSVLFKIPVAQFLPHVTVGLIMWNFIAGCIKEGSEVFIANEGLIKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
LPSALSVHVYRLVWKQTLFLMHNMVIWVILMAIFPRPLGWDILLGIPALALLIANGVWVT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHH
MFFGIVATRYRDFSPLLEALTQLLFYVTPIVWTTETLYSQGGAVSERAKLAMLNPLYHYM
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
EVIRAPLIGAPIHPLNWIVVGCCTVIGLFIAMLAMRQWRFRVSYWV
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]