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The map label for this gene is ybfI [H]

Identifier: 37681373

GI number: 37681373

Start: 3277922

End: 3278728

Strand: Direct

Name: ybfI [H]

Synonym: VV3189

Alternate gene names: 37681373

Gene position: 3277922-3278728 (Clockwise)

Preceding gene: 37681372

Following gene: 37681374

Centisome position: 97.72

GC content: 48.08

Gene sequence:

>807_bases
TTGTACTCTATGGAGCAGATCCACTACATCCCAACACAAGATGACAAGCTCAGCCTGATTGATGCGAAGTATCAGAAGTT
TGCCTTTTCACGGCACTATCATCTGGATTTCCATATCGGGCTGATTACTCATGGCGAACAGCAGTTCCATTCACAGGGTT
GTCATCATCACGTTGGTCATGGGCAGATTGTCATCATGCCTCCTGACGAGCTGCACGATGGCCATTCCAAACAACAAGAA
GGCTATCAGGTGAATGTCTTTGCGATCGAACCTCATCTGTTAAGCGATCTCGCCGATCTTAAGCAAAATGGTCAAATTAT
CAGCTTTAATCAGTTGATCATCTCCGATCCTGTGGTTTTTTCACAACTTCGTAACCTGCACACTTGGTTGCGCAGCAAAA
ACATCAGCCAACTCGCCCAAGATTGTTTGCCATTTGAAGGGTTTAGCACCCTTTTTGATCGCTATGGATCCACTTGCCGC
CAAAAAGCCGTACCACTGGGTCAGCAATCGCAGGCGACACTCAAAGAGTTTCTACTGGCGAATCTCGATCAACCTGTGCG
CTTAGAAACACTGGCACAACTCTGCCAACTTTCCCCCACTCAATTTCAGCGCCAGTTCAAAACCAGAATGGGCATGACAC
CCTATGCGTGGCTGAGCCGCTTACGTTTAGAACAAGCAATGAAGTTGCTCCAAGCGGGCCAATCCGGCACTGAGGTGGCG
CACCAAATTGGCTACTATGACCAAGCGCATTTCAGCAAAGCCTTCAAACAGACCTACGGTATTACCCCATCGCAAATTGC
ACGTTAG

Upstream 100 bases:

>100_bases
CGCCGCAATAGCCGAAAAACCGCACTCAGCCACTGATCGTTTTTTACAAGACAAATGCCATTGAGCTCGCTAAGCTTGGT
CACAAACTGACCAAGCTTTT

Downstream 100 bases:

>100_bases
TGTTGCCTGTGTCAGTTTTTTACAAGCGCAAAGCCGCGCAACCCGAGACAATCAACACTCGATTTTGATGATGCACGAGA
AACACTCATGAACGAACTGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MYSMEQIHYIPTQDDKLSLIDAKYQKFAFSRHYHLDFHIGLITHGEQQFHSQGCHHHVGHGQIVIMPPDELHDGHSKQQE
GYQVNVFAIEPHLLSDLADLKQNGQIISFNQLIISDPVVFSQLRNLHTWLRSKNISQLAQDCLPFEGFSTLFDRYGSTCR
QKAVPLGQQSQATLKEFLLANLDQPVRLETLAQLCQLSPTQFQRQFKTRMGMTPYAWLSRLRLEQAMKLLQAGQSGTEVA
HQIGYYDQAHFSKAFKQTYGITPSQIAR

Sequences:

>Translated_268_residues
MYSMEQIHYIPTQDDKLSLIDAKYQKFAFSRHYHLDFHIGLITHGEQQFHSQGCHHHVGHGQIVIMPPDELHDGHSKQQE
GYQVNVFAIEPHLLSDLADLKQNGQIISFNQLIISDPVVFSQLRNLHTWLRSKNISQLAQDCLPFEGFSTLFDRYGSTCR
QKAVPLGQQSQATLKEFLLANLDQPVRLETLAQLCQLSPTQFQRQFKTRMGMTPYAWLSRLRLEQAMKLLQAGQSGTEVA
HQIGYYDQAHFSKAFKQTYGITPSQIAR
>Mature_268_residues
MYSMEQIHYIPTQDDKLSLIDAKYQKFAFSRHYHLDFHIGLITHGEQQFHSQGCHHHVGHGQIVIMPPDELHDGHSKQQE
GYQVNVFAIEPHLLSDLADLKQNGQIISFNQLIISDPVVFSQLRNLHTWLRSKNISQLAQDCLPFEGFSTLFDRYGSTCR
QKAVPLGQQSQATLKEFLLANLDQPVRLETLAQLCQLSPTQFQRQFKTRMGMTPYAWLSRLRLEQAMKLLQAGQSGTEVA
HQIGYYDQAHFSKAFKQTYGITPSQIAR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30765; Mature: 30765

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSMEQIHYIPTQDDKLSLIDAKYQKFAFSRHYHLDFHIGLITHGEQQFHSQGCHHHVGH
CCCCCCEEECCCCCCCCHHHHHHHHHHHHHCEEEEEEEEEEEECCHHHHHHCCCCCCCCC
GQIVIMPPDELHDGHSKQQEGYQVNVFAIEPHLLSDLADLKQNGQIISFNQLIISDPVVF
CEEEEECCHHHCCCCCHHHCCEEEEEEEECHHHHHHHHHHHHCCCEEEECHHHHCCHHHH
SQLRNLHTWLRSKNISQLAQDCLPFEGFSTLFDRYGSTCRQKAVPLGQQSQATLKEFLLA
HHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHH
NLDQPVRLETLAQLCQLSPTQFQRQFKTRMGMTPYAWLSRLRLEQAMKLLQAGQSGTEVA
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
HQIGYYDQAHFSKAFKQTYGITPSQIAR
HHHCCCHHHHHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure
MYSMEQIHYIPTQDDKLSLIDAKYQKFAFSRHYHLDFHIGLITHGEQQFHSQGCHHHVGH
CCCCCCEEECCCCCCCCHHHHHHHHHHHHHCEEEEEEEEEEEECCHHHHHHCCCCCCCCC
GQIVIMPPDELHDGHSKQQEGYQVNVFAIEPHLLSDLADLKQNGQIISFNQLIISDPVVF
CEEEEECCHHHCCCCCHHHCCEEEEEEEECHHHHHHHHHHHHCCCEEEECHHHHCCHHHH
SQLRNLHTWLRSKNISQLAQDCLPFEGFSTLFDRYGSTCRQKAVPLGQQSQATLKEFLLA
HHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHH
NLDQPVRLETLAQLCQLSPTQFQRQFKTRMGMTPYAWLSRLRLEQAMKLLQAGQSGTEVA
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
HQIGYYDQAHFSKAFKQTYGITPSQIAR
HHHCCCHHHHHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]