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The map label for this gene is rarD [C]

Identifier: 37681372

GI number: 37681372

Start: 3276943

End: 3277857

Strand: Direct

Name: rarD [C]

Synonym: VV3188

Alternate gene names: 37681372

Gene position: 3276943-3277857 (Clockwise)

Preceding gene: 161486587

Following gene: 37681373

Centisome position: 97.69

GC content: 52.02

Gene sequence:

>915_bases
ATGACCGCAGAAGAACAACAAAAAGCACGCCAAGGGGTGTTACTCGCCTTAGGTGCTTATACCATGTGGGGCATCGCGCC
CATCTATTTTAAGTCGCTCGCGGCGGTCTCTCCGCTCGAGATACTCAGCCATCGCGTGGTGTGGTCTTTTTTCTTGCTCG
CCGCCCTGCTCCATTTTGGCCGTCATTGGCGCACCGTGCGCGACGTTTTAACCAGCAAGAGCAAAATGCTCTATCTGGTC
ACGACCGCCATTTTAGTCGGCGCTAACTGGTTAATTTTTATTTGGGCGGTCAATGCCAACCACATGCTTGACGCCAGTCT
TGGCTATTACATCAACCCACTGATCAATGTGTTGCTCGGCATGCTGTTTCTTGGTGAGCGATTACGTAAGTTGCAGTGGT
TTGCGGTCACCTTAGCGGCTTGTGGCGTGCTGGTGCAGCTTGTCGTCTTTGGTTCGGTACCGATCGTCGCGATTGCCCTC
GCCTTTAGCTTTGGCTTCTACGGCTTGCTGCGTAAAAAAGTCAGCGTCGATGCCCAAACTGGACTGTTCATTGAAACCTT
GGTGATGCTGCCAGCCGCAGCGATTTACCTGTTGTTTATTGCCGACACCCCCACCTCTAATATGTTGGCCAACCCTAGCC
AGCTCAATCTGTTGCTCATTGCTGCTGGTGTGGTTACGACGCTGCCTTTGCTCTGCTTTACTGGCGCCGCAACTCGACTC
AAGTTGTCCACCTTAGGCTTTTTCCAATACATAGGCCCAAGTTTGATGTTCTTACTGGCCGTGTTGATTTACGGTGAAGC
ATTCACCACTGACAAAGCGCTCACGTTCGCCTTTATCTGGGGGGCACTCGTGGTATTTAGTTTCGATGGCTTACGCTATC
GCCGCAATAGCCGAAAAACCGCACTCAGCCACTGA

Upstream 100 bases:

>100_bases
TAATGGCGTTTGATGGTGAATTAAACCGCAAAATACTAGGTGATTCCGGACCTCGCTCTTATACTGACCCATCCTTGATA
ACTAAGTTGGCTATCGTTCA

Downstream 100 bases:

>100_bases
TCGTTTTTTACAAGACAAATGCCATTGAGCTCGCTAAGCTTGGTCACAAACTGACCAAGCTTTTTTGTACTCTATGGAGC
AGATCCACTACATCCCAACA

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTAEEQQKARQGVLLALGAYTMWGIAPIYFKSLAAVSPLEILSHRVVWSFFLLAALLHFGRHWRTVRDVLTSKSKMLYLV
TTAILVGANWLIFIWAVNANHMLDASLGYYINPLINVLLGMLFLGERLRKLQWFAVTLAACGVLVQLVVFGSVPIVAIAL
AFSFGFYGLLRKKVSVDAQTGLFIETLVMLPAAAIYLLFIADTPTSNMLANPSQLNLLLIAAGVVTTLPLLCFTGAATRL
KLSTLGFFQYIGPSLMFLLAVLIYGEAFTTDKALTFAFIWGALVVFSFDGLRYRRNSRKTALSH

Sequences:

>Translated_304_residues
MTAEEQQKARQGVLLALGAYTMWGIAPIYFKSLAAVSPLEILSHRVVWSFFLLAALLHFGRHWRTVRDVLTSKSKMLYLV
TTAILVGANWLIFIWAVNANHMLDASLGYYINPLINVLLGMLFLGERLRKLQWFAVTLAACGVLVQLVVFGSVPIVAIAL
AFSFGFYGLLRKKVSVDAQTGLFIETLVMLPAAAIYLLFIADTPTSNMLANPSQLNLLLIAAGVVTTLPLLCFTGAATRL
KLSTLGFFQYIGPSLMFLLAVLIYGEAFTTDKALTFAFIWGALVVFSFDGLRYRRNSRKTALSH
>Mature_303_residues
TAEEQQKARQGVLLALGAYTMWGIAPIYFKSLAAVSPLEILSHRVVWSFFLLAALLHFGRHWRTVRDVLTSKSKMLYLVT
TAILVGANWLIFIWAVNANHMLDASLGYYINPLINVLLGMLFLGERLRKLQWFAVTLAACGVLVQLVVFGSVPIVAIALA
FSFGFYGLLRKKVSVDAQTGLFIETLVMLPAAAIYLLFIADTPTSNMLANPSQLNLLLIAAGVVTTLPLLCFTGAATRLK
LSTLGFFQYIGPSLMFLLAVLIYGEAFTTDKALTFAFIWGALVVFSFDGLRYRRNSRKTALSH

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=61.3559322033898, Blast_Score=380, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33551; Mature: 33420

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAEEQQKARQGVLLALGAYTMWGIAPIYFKSLAAVSPLEILSHRVVWSFFLLAALLHFG
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RHWRTVRDVLTSKSKMLYLVTTAILVGANWLIFIWAVNANHMLDASLGYYINPLINVLLG
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCEECCHHHHHHHHHHHHHHH
MLFLGERLRKLQWFAVTLAACGVLVQLVVFGSVPIVAIALAFSFGFYGLLRKKVSVDAQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GLFIETLVMLPAAAIYLLFIADTPTSNMLANPSQLNLLLIAAGVVTTLPLLCFTGAATRL
CHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
KLSTLGFFQYIGPSLMFLLAVLIYGEAFTTDKALTFAFIWGALVVFSFDGLRYRRNSRKT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHH
ALSH
CCCC
>Mature Secondary Structure 
TAEEQQKARQGVLLALGAYTMWGIAPIYFKSLAAVSPLEILSHRVVWSFFLLAALLHFG
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RHWRTVRDVLTSKSKMLYLVTTAILVGANWLIFIWAVNANHMLDASLGYYINPLINVLLG
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCEECCHHHHHHHHHHHHHHH
MLFLGERLRKLQWFAVTLAACGVLVQLVVFGSVPIVAIALAFSFGFYGLLRKKVSVDAQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GLFIETLVMLPAAAIYLLFIADTPTSNMLANPSQLNLLLIAAGVVTTLPLLCFTGAATRL
CHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
KLSTLGFFQYIGPSLMFLLAVLIYGEAFTTDKALTFAFIWGALVVFSFDGLRYRRNSRKT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHH
ALSH
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]