| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is yceG [C]
Identifier: 37679463
GI number: 37679463
Start: 1299223
End: 1300239
Strand: Direct
Name: yceG [C]
Synonym: VV1279
Alternate gene names: 37679463
Gene position: 1299223-1300239 (Clockwise)
Preceding gene: 161486633
Following gene: 37679464
Centisome position: 38.73
GC content: 45.23
Gene sequence:
>1017_bases GTGATAAAAAAAATAATAGGGCTGCTCTTTATTGCCGCGTTGATGATAGGCGTTGCTACTTTTTGGGCATATTCGCAAAC CAAAACCTACGTTAACCAACCGCTCAAACTCGAGGGCAGTGAGATCATCACCATTCCTTCAGGAAGTGGTTTTGGCCGCA CATTGGCCATTCTGACAGAGAAAGGCTGGATTGAGGAACCCACACATCTGGCGCGCTTAATTCCCAAACTCTACCCAGAA ATTACTCGAATAAAAGCAGGTACCTACCAAATCCAATCAGAGATGTCGCTTTATCAAGCTTTGGAAGTGTTCAATCTTGG CAAAGAACATCAATTTACCATCACATTTGTCGAGGGAAGTCGTTTCCAAGAGTGGATGGTGCAGATGGCACAAGACCCTT ATTTGGTTCATGAATTGGCAGGTTTGAGCGAAGCAGAAATTGCCAAGCGACTGGAGATACCCTATGAAAAGCTTGAAGGC CTTTTTCTTGCGGAAACCTATCACTATACCTACGGCACTTCTGATGTTGAGTTACTCAAACGCGCACATGAGAAGTTAAA TCGAGTGCTGGATAAACATTGGCAGCAGCGTCAAGATAAGTTGCCGCTAAAAAACAGTTATGAAGCGCTAATTCTAGCTT CCATTATTGAGAAAGAAACCGCTATTGATGAAGAACGAGAGCGAGTTGCGTCTGTATTTGTGAACCGCTTAAATAAGCGA ATGCGCTTGCAAACGGACCCTACGGTGATCTATGGCATGGGGGAGGCCTACGATGGCAACATTCGCAAGAAAGATCTACG CACGCCAACGCCATACAATACTTACGTGATTAACGGATTGCCACCGACGCCGATTGCGATGGCGGGAGAAGCCTCTATCG CTGCCGCATTAAATCCAGAGAACAGCAGCTATCTTTACTTTGTCGCTAGCGGTAAGGGTGGGCATGTGTTCTCAAAAACA TTAGCTGAACATAATAGAGCAGTAAGAGCATATCTGCGGGAATTGAAGAAAAGATGA
Upstream 100 bases:
>100_bases TGACCAACTCTTTACTGGGTGTTGCTCCTATCAATCAGATTCTCGAAACCCGTTACCCAATTGGTACCACAACACGATAT TTTCAAGGAATTTTTAACTC
Downstream 100 bases:
>100_bases AGCAAGCAAAATTTATCGTCATTGAAGGTTTAGAAGGCGCAGGGAAAAGCACGGCAATTCAAACGGTTTTGGACACATTA CGCCAAGCAGGGATTAATGA
Product: periplasmic solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MIKKIIGLLFIAALMIGVATFWAYSQTKTYVNQPLKLEGSEIITIPSGSGFGRTLAILTEKGWIEEPTHLARLIPKLYPE ITRIKAGTYQIQSEMSLYQALEVFNLGKEHQFTITFVEGSRFQEWMVQMAQDPYLVHELAGLSEAEIAKRLEIPYEKLEG LFLAETYHYTYGTSDVELLKRAHEKLNRVLDKHWQQRQDKLPLKNSYEALILASIIEKETAIDEERERVASVFVNRLNKR MRLQTDPTVIYGMGEAYDGNIRKKDLRTPTPYNTYVINGLPPTPIAMAGEASIAAALNPENSSYLYFVASGKGGHVFSKT LAEHNRAVRAYLRELKKR
Sequences:
>Translated_338_residues MIKKIIGLLFIAALMIGVATFWAYSQTKTYVNQPLKLEGSEIITIPSGSGFGRTLAILTEKGWIEEPTHLARLIPKLYPE ITRIKAGTYQIQSEMSLYQALEVFNLGKEHQFTITFVEGSRFQEWMVQMAQDPYLVHELAGLSEAEIAKRLEIPYEKLEG LFLAETYHYTYGTSDVELLKRAHEKLNRVLDKHWQQRQDKLPLKNSYEALILASIIEKETAIDEERERVASVFVNRLNKR MRLQTDPTVIYGMGEAYDGNIRKKDLRTPTPYNTYVINGLPPTPIAMAGEASIAAALNPENSSYLYFVASGKGGHVFSKT LAEHNRAVRAYLRELKKR >Mature_338_residues MIKKIIGLLFIAALMIGVATFWAYSQTKTYVNQPLKLEGSEIITIPSGSGFGRTLAILTEKGWIEEPTHLARLIPKLYPE ITRIKAGTYQIQSEMSLYQALEVFNLGKEHQFTITFVEGSRFQEWMVQMAQDPYLVHELAGLSEAEIAKRLEIPYEKLEG LFLAETYHYTYGTSDVELLKRAHEKLNRVLDKHWQQRQDKLPLKNSYEALILASIIEKETAIDEERERVASVFVNRLNKR MRLQTDPTVIYGMGEAYDGNIRKKDLRTPTPYNTYVINGLPPTPIAMAGEASIAAALNPENSSYLYFVASGKGGHVFSKT LAEHNRAVRAYLRELKKR
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=264, Percent_Identity=48.4848484848485, Blast_Score=266, Evalue=1e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 38476; Mature: 38476
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKKIIGLLFIAALMIGVATFWAYSQTKTYVNQPLKLEGSEIITIPSGSGFGRTLAILTE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCEEEEEEC KGWIEEPTHLARLIPKLYPEITRIKAGTYQIQSEMSLYQALEVFNLGKEHQFTITFVEGS CCCCCCHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC RFQEWMVQMAQDPYLVHELAGLSEAEIAKRLEIPYEKLEGLFLAETYHYTYGTSDVELLK HHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCHHHHCCEEEEEEEEEECCCCHHHHHH RAHEKLNRVLDKHWQQRQDKLPLKNSYEALILASIIEKETAIDEERERVASVFVNRLNKR HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH MRLQTDPTVIYGMGEAYDGNIRKKDLRTPTPYNTYVINGLPPTPIAMAGEASIAAALNPE EEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCEEEEECCC NSSYLYFVASGKGGHVFSKTLAEHNRAVRAYLRELKKR CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIKKIIGLLFIAALMIGVATFWAYSQTKTYVNQPLKLEGSEIITIPSGSGFGRTLAILTE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCEEEEEEC KGWIEEPTHLARLIPKLYPEITRIKAGTYQIQSEMSLYQALEVFNLGKEHQFTITFVEGS CCCCCCHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC RFQEWMVQMAQDPYLVHELAGLSEAEIAKRLEIPYEKLEGLFLAETYHYTYGTSDVELLK HHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCHHHHCCEEEEEEEEEECCCCHHHHHH RAHEKLNRVLDKHWQQRQDKLPLKNSYEALILASIIEKETAIDEERERVASVFVNRLNKR HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH MRLQTDPTVIYGMGEAYDGNIRKKDLRTPTPYNTYVINGLPPTPIAMAGEASIAAALNPE EEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCEEEEECCC NSSYLYFVASGKGGHVFSKTLAEHNRAVRAYLRELKKR CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]