| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is epsM [H]
Identifier: 37678546
GI number: 37678546
Start: 371227
End: 371955
Strand: Direct
Name: epsM [H]
Synonym: VV0362
Alternate gene names: 37678546
Gene position: 371227-371955 (Clockwise)
Preceding gene: 37678545
Following gene: 37678547
Centisome position: 11.07
GC content: 49.93
Gene sequence:
>729_bases ATGGCCATGTCACCATCGCCCCGTTTACTGGGCAAGCGCAGTCAGGTAACTCTAATGAACACTGAATACCCGAGTGCATG CTCACTTGGTGCATGCGCCATTCTCGGAGCCAGTGGCCACGGTAAAGTCGTTGCAGAAATCGCTGAGCTCAATGGTTATT CTGAAATTCATTTTTATGACGATCGCTGGCCAGAATTACACAATATTGAGCATTGGAATGTAGTCGGCGATTCCGAAGCT TTGCTTGCTAGCGTGCAGCAGTATGCTTGCGTTGCGGTTGCAATAGGTAATAATGCGATCCGATTAAATAAACATAAACA GTTACTCGAGGTTGGCGCTAGAATGCCTTCATTGGTACATCCTAGGGCCGTTATTAGCGGTTATGCCACAATCGCAGAAG GATGTGTTGTGATGGCGAATGCGGTCGTCAATCCCTTCGCGGTGCTCGGGCAAACATGCATTGTCAATACTGGCGCTGTT GTCGAACATGATTGTCTATTGGCCGATGGTGTACACCTTTCGCCTAATTCTGCGATTGCAGGGAGTACTCAGCTCGGAGA ATGCGCTTGGCTAGGCATCGGTGCTGTGACTCGGCAATTAGTCTCGGTGGGTGCAGGTGCGACCATTGGCGCAGGGGCCA CGGTTATTGGTAATGTTGCCGCTAATACAGTCGTGATGGGCACGCCTGCCAAAATACAAATTACTAGAGATCTAGGAGCT AGGTCCTAG
Upstream 100 bases:
>100_bases CTTGATGTGTGGTATGTGGATAACCGTTCGTTTTGGCTCGATTTTAAAATACTATTACTGACAGTGAAAAAGGTGTTTGT TAAAGAAGGCATCTCGGCAG
Downstream 100 bases:
>100_bases GTAAGAGAAGGTACTAGGAAAAGCAGGTTCTAGGGAAGAGCTGGTTCTAGGAAGAGCAAAACCTAGAACCTAGCCCCTAG AAACCTAGAAACCTAGAAAC
Product: putative acetyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MAMSPSPRLLGKRSQVTLMNTEYPSACSLGACAILGASGHGKVVAEIAELNGYSEIHFYDDRWPELHNIEHWNVVGDSEA LLASVQQYACVAVAIGNNAIRLNKHKQLLEVGARMPSLVHPRAVISGYATIAEGCVVMANAVVNPFAVLGQTCIVNTGAV VEHDCLLADGVHLSPNSAIAGSTQLGECAWLGIGAVTRQLVSVGAGATIGAGATVIGNVAANTVVMGTPAKIQITRDLGA RS
Sequences:
>Translated_242_residues MAMSPSPRLLGKRSQVTLMNTEYPSACSLGACAILGASGHGKVVAEIAELNGYSEIHFYDDRWPELHNIEHWNVVGDSEA LLASVQQYACVAVAIGNNAIRLNKHKQLLEVGARMPSLVHPRAVISGYATIAEGCVVMANAVVNPFAVLGQTCIVNTGAV VEHDCLLADGVHLSPNSAIAGSTQLGECAWLGIGAVTRQLVSVGAGATIGAGATVIGNVAANTVVMGTPAKIQITRDLGA RS >Mature_241_residues AMSPSPRLLGKRSQVTLMNTEYPSACSLGACAILGASGHGKVVAEIAELNGYSEIHFYDDRWPELHNIEHWNVVGDSEAL LASVQQYACVAVAIGNNAIRLNKHKQLLEVGARMPSLVHPRAVISGYATIAEGCVVMANAVVNPFAVLGQTCIVNTGAVV EHDCLLADGVHLSPNSAIAGSTQLGECAWLGIGAVTRQLVSVGAGATIGAGATVIGNVAANTVVMGTPAKIQITRDLGAR S
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: COG0110
COG function: function code R; Acetyltransferase (isoleucine patch superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transferase hexapeptide repeat family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018357 - InterPro: IPR013817 - InterPro: IPR020019 - InterPro: IPR011004 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25033; Mature: 24902
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMSPSPRLLGKRSQVTLMNTEYPSACSLGACAILGASGHGKVVAEIAELNGYSEIHFYD CCCCCCCHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEHHHCCCCEEEEEEC DRWPELHNIEHWNVVGDSEALLASVQQYACVAVAIGNNAIRLNKHKQLLEVGARMPSLVH CCCCCCCCCCEEEEECCHHHHHHHHHHHEEEEEEECCCEEEECHHHHHHHHHHCCCCCCC PRAVISGYATIAEGCVVMANAVVNPFAVLGQTCIVNTGAVVEHDCLLADGVHLSPNSAIA CHHHHHHHHHHHHHHHEEHHHHHCHHHHHCCHHEEECCCEEECCEEEECCEEECCCCCCC GSTQLGECAWLGIGAVTRQLVSVGAGATIGAGATVIGNVAANTVVMGTPAKIQITRDLGA CCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCHHEEECHHCCEEEECCCCEEEEECCCCC RS CC >Mature Secondary Structure AMSPSPRLLGKRSQVTLMNTEYPSACSLGACAILGASGHGKVVAEIAELNGYSEIHFYD CCCCCCHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEHHHCCCCEEEEEEC DRWPELHNIEHWNVVGDSEALLASVQQYACVAVAIGNNAIRLNKHKQLLEVGARMPSLVH CCCCCCCCCCEEEEECCHHHHHHHHHHHEEEEEEECCCEEEECHHHHHHHHHHCCCCCCC PRAVISGYATIAEGCVVMANAVVNPFAVLGQTCIVNTGAVVEHDCLLADGVHLSPNSAIA CHHHHHHHHHHHHHHHEEHHHHHCHHHHHCCHHEEECCCEEECCEEEECCEEECCCCCCC GSTQLGECAWLGIGAVTRQLVSVGAGATIGAGATVIGNVAANTVVMGTPAKIQITRDLGA CCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCHHEEECHHCCEEEECCCCEEEEECCCCC RS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]