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The map label for this gene is spsC [H]

Identifier: 37678547

GI number: 37678547

Start: 372109

End: 373284

Strand: Direct

Name: spsC [H]

Synonym: VV0363

Alternate gene names: 37678547

Gene position: 372109-373284 (Clockwise)

Preceding gene: 37678546

Following gene: 37678548

Centisome position: 11.09

GC content: 48.55

Gene sequence:

>1176_bases
ATGTTAAATACCCCATTTTCTCCATGGCCAAGCTTCACTCAAGAAGAGGCCGATGCAGTGAGCCGTGTGCTTTTGTCAAA
CAAAGTAAACTACTGGACTGGCACTGAATGCCGAGAGTTTGAAAAAGAGTTCGCTGCCTGGGCAGGCTGTGAATACGCGA
TTGCGCTAGGCAATGGTACGCTAGCACTTGATTTAGCGCTTAAAGCCCTAGGTGTTGGCGGGGGGGATGAAGTGATCACT
ACCTCGCGCACCTTTTTAGCGTCGGCCTCTGCAATTGTTACTGCGGGGGCGAATCCCGTTTTTGCGGATGTTGATCTTAA
CAGCCAAAATATCACCGCAGAAACCATCGATGCAGTCGTCACAGAAAAAACCAAAGCCGTTATTGTGGTGCATTTGGCGG
GCATGCCAGCAGAAATGGACGCTATTATGGCACTCGCTGCCGAGCGCGGTTTCTATGTGATCGAAGATTGCGCGCAAGCG
CATGGCGCAAAATACAAAGGTCGCAGCGTAGGCTCCATTGGCCACATTGGCGCTTGGTCATTCTGCCAAGATAAAATCAT
GACTACTGGCGGTGAAGGTGGCATGGTCACTACCAATGATCAGGCACTTTGGTCGGCAATGTGGTCTTATAAAGATCATG
GCAAGAGTTACGATGCGGTGTACAATCGCCAGCATCCTCCGGGTTTTCGCTGGTTGCATGAAAGCTTTGGCACCAACTGG
CGTATGACAGAGCTACAAGGGATCTTGGGCCGAATTCAGCTTCAGCGTATGGCTGAGTGGACCTCAAAACGTCAACATAA
CGGCAAGTTGATTGATCAAGCCGTGGCAGACCTGCCTGTGGTGCGTCGTGTTGAAGTGGCCGATTACATAGAACATGCAG
AATACAAACACTATTTATTTGTTAACCCTGAGCAGTTGAAGCAAGGTTGGACTCGTGATCGCATCGTTGAAACGATCAAT
GCTGCTGGTGTGCCTGCTTATCAAGGTAGTTGCTCAGAAATTTACCTTGAAAAAGCGTTTGATAACACTCCATGGCGTCC
AGAAGAGCGTTTAAAAAATGCGGTTACTCTGGGTGAAACAAGTTTGATGTTCCTTGTTCATCCGACGTTAACACCAGCGG
AAATGGAAAAAACAACGGCTGTAGTCAGAAATGTGCTTCTAAGCGCATCATTGTAA

Upstream 100 bases:

>100_bases
GAGCAAAACCTAGAACCTAGCCCCTAGAAACCTAGAAACCTAGAAACCTAGCCCCTAGCAACCTCGTACCTAGAATTTAT
TTCGCCTAATAGGAATTTCG

Downstream 100 bases:

>100_bases
AACAAAATTGATAGCAAATTACAGGCAGTAAGTGTTATTGCCTGTTTTCTTTTTTCATTTCCTGTTGATTCTCGTCTAAA
ATTATCACCACTATAACTCT

Product: pilin glycosylation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MLNTPFSPWPSFTQEEADAVSRVLLSNKVNYWTGTECREFEKEFAAWAGCEYAIALGNGTLALDLALKALGVGGGDEVIT
TSRTFLASASAIVTAGANPVFADVDLNSQNITAETIDAVVTEKTKAVIVVHLAGMPAEMDAIMALAAERGFYVIEDCAQA
HGAKYKGRSVGSIGHIGAWSFCQDKIMTTGGEGGMVTTNDQALWSAMWSYKDHGKSYDAVYNRQHPPGFRWLHESFGTNW
RMTELQGILGRIQLQRMAEWTSKRQHNGKLIDQAVADLPVVRRVEVADYIEHAEYKHYLFVNPEQLKQGWTRDRIVETIN
AAGVPAYQGSCSEIYLEKAFDNTPWRPEERLKNAVTLGETSLMFLVHPTLTPAEMEKTTAVVRNVLLSASL

Sequences:

>Translated_391_residues
MLNTPFSPWPSFTQEEADAVSRVLLSNKVNYWTGTECREFEKEFAAWAGCEYAIALGNGTLALDLALKALGVGGGDEVIT
TSRTFLASASAIVTAGANPVFADVDLNSQNITAETIDAVVTEKTKAVIVVHLAGMPAEMDAIMALAAERGFYVIEDCAQA
HGAKYKGRSVGSIGHIGAWSFCQDKIMTTGGEGGMVTTNDQALWSAMWSYKDHGKSYDAVYNRQHPPGFRWLHESFGTNW
RMTELQGILGRIQLQRMAEWTSKRQHNGKLIDQAVADLPVVRRVEVADYIEHAEYKHYLFVNPEQLKQGWTRDRIVETIN
AAGVPAYQGSCSEIYLEKAFDNTPWRPEERLKNAVTLGETSLMFLVHPTLTPAEMEKTTAVVRNVLLSASL
>Mature_391_residues
MLNTPFSPWPSFTQEEADAVSRVLLSNKVNYWTGTECREFEKEFAAWAGCEYAIALGNGTLALDLALKALGVGGGDEVIT
TSRTFLASASAIVTAGANPVFADVDLNSQNITAETIDAVVTEKTKAVIVVHLAGMPAEMDAIMALAAERGFYVIEDCAQA
HGAKYKGRSVGSIGHIGAWSFCQDKIMTTGGEGGMVTTNDQALWSAMWSYKDHGKSYDAVYNRQHPPGFRWLHESFGTNW
RMTELQGILGRIQLQRMAEWTSKRQHNGKLIDQAVADLPVVRRVEVADYIEHAEYKHYLFVNPEQLKQGWTRDRIVETIN
AAGVPAYQGSCSEIYLEKAFDNTPWRPEERLKNAVTLGETSLMFLVHPTLTPAEMEKTTAVVRNVLLSASL

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=356, Percent_Identity=32.0224719101124, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI2367285, Length=230, Percent_Identity=36.5217391304348, Blast_Score=143, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 43128; Mature: 43128

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTPFSPWPSFTQEEADAVSRVLLSNKVNYWTGTECREFEKEFAAWAGCEYAIALGNGT
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
LALDLALKALGVGGGDEVITTSRTFLASASAIVTAGANPVFADVDLNSQNITAETIDAVV
EEEEEHHHHHCCCCCCCEEEECHHHHHCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHH
TEKTKAVIVVHLAGMPAEMDAIMALAAERGFYVIEDCAQAHGAKYKGRSVGSIGHIGAWS
HCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEHHHHHHHCCCCCCCCCCCCCCCCCCHH
FCQDKIMTTGGEGGMVTTNDQALWSAMWSYKDHGKSYDAVYNRQHPPGFRWLHESFGTNW
HHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCC
RMTELQGILGRIQLQRMAEWTSKRQHNGKLIDQAVADLPVVRRVEVADYIEHAEYKHYLF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEE
VNPEQLKQGWTRDRIVETINAAGVPAYQGSCSEIYLEKAFDNTPWRPEERLKNAVTLGET
ECHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHEECCCC
SLMFLVHPTLTPAEMEKTTAVVRNVLLSASL
EEEEEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLNTPFSPWPSFTQEEADAVSRVLLSNKVNYWTGTECREFEKEFAAWAGCEYAIALGNGT
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
LALDLALKALGVGGGDEVITTSRTFLASASAIVTAGANPVFADVDLNSQNITAETIDAVV
EEEEEHHHHHCCCCCCCEEEECHHHHHCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHH
TEKTKAVIVVHLAGMPAEMDAIMALAAERGFYVIEDCAQAHGAKYKGRSVGSIGHIGAWS
HCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEHHHHHHHCCCCCCCCCCCCCCCCCCHH
FCQDKIMTTGGEGGMVTTNDQALWSAMWSYKDHGKSYDAVYNRQHPPGFRWLHESFGTNW
HHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCC
RMTELQGILGRIQLQRMAEWTSKRQHNGKLIDQAVADLPVVRRVEVADYIEHAEYKHYLF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEE
VNPEQLKQGWTRDRIVETINAAGVPAYQGSCSEIYLEKAFDNTPWRPEERLKNAVTLGET
ECHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHEECCCC
SLMFLVHPTLTPAEMEKTTAVVRNVLLSASL
EEEEEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]