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The map label for this gene is sigK [H]

Identifier: 37523926

GI number: 37523926

Start: 4592987

End: 4593568

Strand: Direct

Name: sigK [H]

Synonym: glr4357

Alternate gene names: 37523926

Gene position: 4592987-4593568 (Clockwise)

Preceding gene: 37523924

Following gene: 37523927

Centisome position: 98.58

GC content: 62.89

Gene sequence:

>582_bases
ATGGCGACTACAGAATTGTCCGAATCGATGGCCCAACCGAGCGATGCACAGCTGTTCTACGCCCTGCGCTCAGGTGAGCG
CACAGCGATGGTGAGCTTGTATCGTCGCTATGCGAGCGTCGTCTATGGCCTGGCGCTGTCGATTCTCAAAAATCCCCAGG
AGGCCGAAGACCTCAGCCAGGAGATCTTTTTGAGCCTCTGGCGCGGCGGCGGCTACAACCCGGAGCGCGGTTCGCTGTCG
AGCTATTTGATGCTGCTCACCCGCTCGCGCGCCCTCGACAAACTGCGCGCCCGCGGCCGCAAACTCAAGATGATCGAGCG
GGTCGGCCAGGTGAATCTGGGTGAACCCTCCGGGGTGACGCCCCTGGAGCGGGCGACCGTCGACGAGTGCTCCGAACGGG
TGCGCGAGGCGGTGGCAAGTTTGCCCCTAAAGGAGCGCCAGGTGCTCGAACTGAGCGTGTTCAGCGGCCTGAGTTATCCG
CAGATCGCCGCGCGGACGGGCACCCCGCTGGGCACCATCAAGCGCTGGGCGCGCAAGGGCATGCTTCAGCTCAAAGAAGA
TCTCAAGGCACTCATAGAATAG

Upstream 100 bases:

>100_bases
TGACCGCTCCGCAGGGGGCGCTCACCACCCCGCCCGCACCGGGCGCCGCGCCCTTTCTATCTTTTCTTCCCAATCGGGTT
CAAATACAGTGATGCAAACC

Downstream 100 bases:

>100_bases
CCGCCGACACCGATGGGATCCCTTCCCCGTACCGGCGCCTGCTAACGTGGTAGGCGCCGTTCTTTGTCCAACGCACCAGG
GGAGGAGGCCCGCCATGTTT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MATTELSESMAQPSDAQLFYALRSGERTAMVSLYRRYASVVYGLALSILKNPQEAEDLSQEIFLSLWRGGGYNPERGSLS
SYLMLLTRSRALDKLRARGRKLKMIERVGQVNLGEPSGVTPLERATVDECSERVREAVASLPLKERQVLELSVFSGLSYP
QIAARTGTPLGTIKRWARKGMLQLKEDLKALIE

Sequences:

>Translated_193_residues
MATTELSESMAQPSDAQLFYALRSGERTAMVSLYRRYASVVYGLALSILKNPQEAEDLSQEIFLSLWRGGGYNPERGSLS
SYLMLLTRSRALDKLRARGRKLKMIERVGQVNLGEPSGVTPLERATVDECSERVREAVASLPLKERQVLELSVFSGLSYP
QIAARTGTPLGTIKRWARKGMLQLKEDLKALIE
>Mature_192_residues
ATTELSESMAQPSDAQLFYALRSGERTAMVSLYRRYASVVYGLALSILKNPQEAEDLSQEIFLSLWRGGGYNPERGSLSS
YLMLLTRSRALDKLRARGRKLKMIERVGQVNLGEPSGVTPLERATVDECSERVREAVASLPLKERQVLELSVFSGLSYPQ
IAARTGTPLGTIKRWARKGMLQLKEDLKALIE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21523; Mature: 21392

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTELSESMAQPSDAQLFYALRSGERTAMVSLYRRYASVVYGLALSILKNPQEAEDLSQ
CCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
EIFLSLWRGGGYNPERGSLSSYLMLLTRSRALDKLRARGRKLKMIERVGQVNLGEPSGVT
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
PLERATVDECSERVREAVASLPLKERQVLELSVFSGLSYPQIAARTGTPLGTIKRWARKG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHH
MLQLKEDLKALIE
HHHHHHHHHHHCC
>Mature Secondary Structure 
ATTELSESMAQPSDAQLFYALRSGERTAMVSLYRRYASVVYGLALSILKNPQEAEDLSQ
CCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
EIFLSLWRGGGYNPERGSLSSYLMLLTRSRALDKLRARGRKLKMIERVGQVNLGEPSGVT
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
PLERATVDECSERVREAVASLPLKERQVLELSVFSGLSYPQIAARTGTPLGTIKRWARKG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHH
MLQLKEDLKALIE
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA