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The map label for this gene is rimN [H]

Identifier: 37522843

GI number: 37522843

Start: 3478010

End: 3478603

Strand: Direct

Name: rimN [H]

Synonym: glr3274

Alternate gene names: 37522843

Gene position: 3478010-3478603 (Clockwise)

Preceding gene: 37522840

Following gene: 37522845

Centisome position: 74.65

GC content: 65.66

Gene sequence:

>594_bases
GTGAAAGCGGAGGATTGGCGCGATCGACCGATGGCCGAGTATTTTCTGAACCTGGTGGATTTTGCCGCCTACTTGCGCGC
AGGCGGTGTGGGGGCAATGCCTACCGACACAGTGCCGGGTCTGGTCTGCCTGCCCGAGTACGCCGAGCAAATCTACGCCC
TCAAAGGTCGCGACGAGCATAAGCCGCTCATTTTGCTGGGGGCGGCGGCGGCGGATCTGGCTTTCTACACCGCACAATGG
CGCTCGGAGTGGACAGAGCTGGCCGAGCGGGGTTGGCCTGGAGCATTGACGCTGGTGCTGCCCGTGGGCGGCCGGGTGCC
TGCCGCTGTCCACCGGGGGGGCGGGACTGTCGGCGTGCGCATCCCGAACCATCCCGACGCCCACGCACTGCTCGCAAAAA
CCGGTCCCCTCGCTTCCACCAGTGCCAACCGCTCGGGCCAACCGGTGCTCATCGAGCCGCAAGCGATTCGACGGACCTTT
GCCGGGGTTGCGCTGCTCGCAGGTACCTACCGCGGCAGCGGCACCGCCTCGACGGTGGTCCGCTGGGAGGACGACGGCTG
GCAGGTACTACGTCAAGGTGATTTCAAATTGTGA

Upstream 100 bases:

>100_bases
GTCTGAATCAACCGGCGAAGCTGCCGTCTTTGGATGCTGGAAACTGGGCTGACATCGGCGCCGGACGTGCGGTCGGGCTT
ACCTGAGATCCGGTTCTAAA

Downstream 100 bases:

>100_bases
AAAATTGCAAAGCAGGTGCCCGTTGCCGCGACGGTAAACGCATGCGATCAGGGGCGATGGCGCGAAATGAATTTTTCGTA
TTCGGCCTGGCTTTGGTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MKAEDWRDRPMAEYFLNLVDFAAYLRAGGVGAMPTDTVPGLVCLPEYAEQIYALKGRDEHKPLILLGAAAADLAFYTAQW
RSEWTELAERGWPGALTLVLPVGGRVPAAVHRGGGTVGVRIPNHPDAHALLAKTGPLASTSANRSGQPVLIEPQAIRRTF
AGVALLAGTYRGSGTASTVVRWEDDGWQVLRQGDFKL

Sequences:

>Translated_197_residues
MKAEDWRDRPMAEYFLNLVDFAAYLRAGGVGAMPTDTVPGLVCLPEYAEQIYALKGRDEHKPLILLGAAAADLAFYTAQW
RSEWTELAERGWPGALTLVLPVGGRVPAAVHRGGGTVGVRIPNHPDAHALLAKTGPLASTSANRSGQPVLIEPQAIRRTF
AGVALLAGTYRGSGTASTVVRWEDDGWQVLRQGDFKL
>Mature_197_residues
MKAEDWRDRPMAEYFLNLVDFAAYLRAGGVGAMPTDTVPGLVCLPEYAEQIYALKGRDEHKPLILLGAAAADLAFYTAQW
RSEWTELAERGWPGALTLVLPVGGRVPAAVHRGGGTVGVRIPNHPDAHALLAKTGPLASTSANRSGQPVLIEPQAIRRTF
AGVALLAGTYRGSGTASTVVRWEDDGWQVLRQGDFKL

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17537239, Length=179, Percent_Identity=34.0782122905028, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21218; Mature: 21218

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAEDWRDRPMAEYFLNLVDFAAYLRAGGVGAMPTDTVPGLVCLPEYAEQIYALKGRDEH
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCC
KPLILLGAAAADLAFYTAQWRSEWTELAERGWPGALTLVLPVGGRVPAAVHRGGGTVGVR
CCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCEEEEE
IPNHPDAHALLAKTGPLASTSANRSGQPVLIEPQAIRRTFAGVALLAGTYRGSGTASTVV
CCCCCCHHEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEE
RWEDDGWQVLRQGDFKL
EECCCCHHHHHCCCCCC
>Mature Secondary Structure
MKAEDWRDRPMAEYFLNLVDFAAYLRAGGVGAMPTDTVPGLVCLPEYAEQIYALKGRDEH
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCC
KPLILLGAAAADLAFYTAQWRSEWTELAERGWPGALTLVLPVGGRVPAAVHRGGGTVGVR
CCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCEEEEE
IPNHPDAHALLAKTGPLASTSANRSGQPVLIEPQAIRRTFAGVALLAGTYRGSGTASTVV
CCCCCCHHEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEE
RWEDDGWQVLRQGDFKL
EECCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA