| Definition | Gloeobacter violaceus PCC 7421 chromosome, complete genome. |
|---|---|
| Accession | NC_005125 |
| Length | 4,659,019 |
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The map label for this gene is ctpA [H]
Identifier: 37522671
GI number: 37522671
Start: 3303295
End: 3304632
Strand: Reverse
Name: ctpA [H]
Synonym: gll3102
Alternate gene names: 37522671
Gene position: 3304632-3303295 (Counterclockwise)
Preceding gene: 37522672
Following gene: 37522670
Centisome position: 70.93
GC content: 62.71
Gene sequence:
>1338_bases ATGAAGACGCCTAAGTTTTTGCTGCCGGTCGGCCTTGCCTGCGCGACCGTTCTGAGTTTGTTGAGCGCGTTTAATATGCC CAGTTGGGCCAACTTTAAAGACGCGCCGAAGGAGATCATCGACGAAGTCTGGCAGGTGGTCAACCGCGAGTACGTCGATC CCACCTTTAACAACCAGAACTGGCAGGAGACCCGCCGCAAGTACCTGGCCAAAGACTATAAAAGCCGCGAGGACGCTTAC AAGAGCACGCGCGAGATGCTTAAGGGCCTGGGCGATCCGTACACGCGCTTTATGGACCCCAAGCAGTACGAGAGCATGAA AGTCGAGACCAGCGGCGACTACCAGGGGGTGGGTATCCAGCTGGGCCTCGATGAGAAGACCCACGAACTGACAGTAGTCT CACCCATCGAGGACACGCCTGCGTTTACTGCCGGGGTCAAACCCAAAGACGTGCTCCTTTCGATCGACGGCCGTTCCACC AAGGGCATGGATATCGATCAGGCGGTCAATTTTATTCGCGGCCAGGCGGGCACCAGCGTCGCGCTCAAATTTCGCCGCGA AGGCAAACCGCTCACCCTGTCGCTGGTGCGCACCCGCATCGAACTCAAACCCGTCAAATATTCGCTGCGCACCGAGGGCG ACCGGCGCGTCGGTTATATTCGTCTGTCGCAGTTCAACGCCTACGCCGCCAAGGATATGGGCAACGCCGTGGCGAAACTC ACCCGCGAGCAGGCCGACGGCTTCATCCTCGATCTGCGCAGCAACCCCGGCGGGCTTCTCTACGCCAGCGCCGACATCGC CCGGCTGTGGCTCTCCGAGGGCACGATCGTCTCGACGGTGGATCGCGACGGCCAGCGCGAGAGCATCACCGTGAGCCGCC CCGCCATGACCAGCAAACCCTTGGTGGTACTGGTGGACGGTGCTTCCGCCTCGGCCAGTGAAATTTTGGGCGGCGCGCTG CAGGACCATCACCGGGCGGTGCTGGTGGGCACGCGCACCTACGGCAAGGGGTTGGTGCAGTCGGTGCATTCGCTCTCGGA CGGTTCGGGGGTGGCGGTGACCATCGCCCACTACCAGACACCCTCCGGCCGGGACATCAACAAAAAAGGCATCGACCCGG ACATCAAAGTCGAGCTCACCAAAGAGATGGCCAAGAACCTCAAGGCCGACCAGGTGGCCACCCTCGCCGACCCGCAGTAC GCCCGCGCCGTCGATGTGCTCGGCCAGCAAATCGCCGGGATGCCCGTCGAGCAGGTGGTGGCGGCGGCCGGCAAACCTTT CCCTGCCGAGCGCCAGCCGGTGGCCGCCGAGAACCAGACGCCGGTGGCGACGCCATGA
Upstream 100 bases:
>100_bases GGCGGGCGTCCAGTTCAGTGCAGGCGGTAGTGCGTGCTAAAGTGTCCCTACCCAATTGAAGCACCGCCTCCACCGCCGTT GCCGCCGAGAATAGCTACCT
Downstream 100 bases:
>100_bases GCGCGAGTCTGGGTGCGACGCGCTTCAGGCCGGATCTGCTGAGTCTCGACGACCTCGACGAAGCGCAATTGCACGCGCTT CTGACCCTCGCCCACCAGCT
Product: carboxyl-terminal protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 445; Mature: 445
Protein sequence:
>445_residues MKTPKFLLPVGLACATVLSLLSAFNMPSWANFKDAPKEIIDEVWQVVNREYVDPTFNNQNWQETRRKYLAKDYKSREDAY KSTREMLKGLGDPYTRFMDPKQYESMKVETSGDYQGVGIQLGLDEKTHELTVVSPIEDTPAFTAGVKPKDVLLSIDGRST KGMDIDQAVNFIRGQAGTSVALKFRREGKPLTLSLVRTRIELKPVKYSLRTEGDRRVGYIRLSQFNAYAAKDMGNAVAKL TREQADGFILDLRSNPGGLLYASADIARLWLSEGTIVSTVDRDGQRESITVSRPAMTSKPLVVLVDGASASASEILGGAL QDHHRAVLVGTRTYGKGLVQSVHSLSDGSGVAVTIAHYQTPSGRDINKKGIDPDIKVELTKEMAKNLKADQVATLADPQY ARAVDVLGQQIAGMPVEQVVAAAGKPFPAERQPVAAENQTPVATP
Sequences:
>Translated_445_residues MKTPKFLLPVGLACATVLSLLSAFNMPSWANFKDAPKEIIDEVWQVVNREYVDPTFNNQNWQETRRKYLAKDYKSREDAY KSTREMLKGLGDPYTRFMDPKQYESMKVETSGDYQGVGIQLGLDEKTHELTVVSPIEDTPAFTAGVKPKDVLLSIDGRST KGMDIDQAVNFIRGQAGTSVALKFRREGKPLTLSLVRTRIELKPVKYSLRTEGDRRVGYIRLSQFNAYAAKDMGNAVAKL TREQADGFILDLRSNPGGLLYASADIARLWLSEGTIVSTVDRDGQRESITVSRPAMTSKPLVVLVDGASASASEILGGAL QDHHRAVLVGTRTYGKGLVQSVHSLSDGSGVAVTIAHYQTPSGRDINKKGIDPDIKVELTKEMAKNLKADQVATLADPQY ARAVDVLGQQIAGMPVEQVVAAAGKPFPAERQPVAAENQTPVATP >Mature_445_residues MKTPKFLLPVGLACATVLSLLSAFNMPSWANFKDAPKEIIDEVWQVVNREYVDPTFNNQNWQETRRKYLAKDYKSREDAY KSTREMLKGLGDPYTRFMDPKQYESMKVETSGDYQGVGIQLGLDEKTHELTVVSPIEDTPAFTAGVKPKDVLLSIDGRST KGMDIDQAVNFIRGQAGTSVALKFRREGKPLTLSLVRTRIELKPVKYSLRTEGDRRVGYIRLSQFNAYAAKDMGNAVAKL TREQADGFILDLRSNPGGLLYASADIARLWLSEGTIVSTVDRDGQRESITVSRPAMTSKPLVVLVDGASASASEILGGAL QDHHRAVLVGTRTYGKGLVQSVHSLSDGSGVAVTIAHYQTPSGRDINKKGIDPDIKVELTKEMAKNLKADQVATLADPQY ARAVDVLGQQIAGMPVEQVVAAAGKPFPAERQPVAAENQTPVATP
Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=312, Percent_Identity=32.3717948717949, Blast_Score=132, Evalue=4e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 48640; Mature: 48640
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTPKFLLPVGLACATVLSLLSAFNMPSWANFKDAPKEIIDEVWQVVNREYVDPTFNNQN CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC WQETRRKYLAKDYKSREDAYKSTREMLKGLGDPYTRFMDPKQYESMKVETSGDYQGVGIQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCEEEECCCCCCCEEEE LGLDEKTHELTVVSPIEDTPAFTAGVKPKDVLLSIDGRSTKGMDIDQAVNFIRGQAGTSV ECCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEE ALKFRREGKPLTLSLVRTRIELKPVKYSLRTEGDRRVGYIRLSQFNAYAAKDMGNAVAKL EEEEECCCCCEEEEEEHHHHEEEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHH TREQADGFILDLRSNPGGLLYASADIARLWLSEGTIVSTVDRDGQRESITVSRPAMTSKP HHHHCCCEEEEEECCCCEEEEECHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCC LVVLVDGASASASEILGGALQDHHRAVLVGTRTYGKGLVQSVHSLSDGSGVAVTIAHYQT EEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEECC PSGRDINKKGIDPDIKVELTKEMAKNLKADQVATLADPQYARAVDVLGQQIAGMPVEQVV CCCCCCCCCCCCCCEEEEEHHHHHHCCCHHHEEECCCCHHHHHHHHHHHHHCCCCHHHHH AAAGKPFPAERQPVAAENQTPVATP HHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKTPKFLLPVGLACATVLSLLSAFNMPSWANFKDAPKEIIDEVWQVVNREYVDPTFNNQN CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC WQETRRKYLAKDYKSREDAYKSTREMLKGLGDPYTRFMDPKQYESMKVETSGDYQGVGIQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCEEEECCCCCCCEEEE LGLDEKTHELTVVSPIEDTPAFTAGVKPKDVLLSIDGRSTKGMDIDQAVNFIRGQAGTSV ECCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEE ALKFRREGKPLTLSLVRTRIELKPVKYSLRTEGDRRVGYIRLSQFNAYAAKDMGNAVAKL EEEEECCCCCEEEEEEHHHHEEEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHH TREQADGFILDLRSNPGGLLYASADIARLWLSEGTIVSTVDRDGQRESITVSRPAMTSKP HHHHCCCEEEEEECCCCEEEEECHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCC LVVLVDGASASASEILGGALQDHHRAVLVGTRTYGKGLVQSVHSLSDGSGVAVTIAHYQT EEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEECC PSGRDINKKGIDPDIKVELTKEMAKNLKADQVATLADPQYARAVDVLGQQIAGMPVEQVV CCCCCCCCCCCCCCEEEEEHHHHHHCCCHHHEEECCCCHHHHHHHHHHHHHCCCCHHHHH AAAGKPFPAERQPVAAENQTPVATP HHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8034700; 8058761; 8590279; 8905231 [H]