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The map label for this gene is rpoZ

Identifier: 37521189

GI number: 37521189

Start: 1736313

End: 1736534

Strand: Reverse

Name: rpoZ

Synonym: gsl1620

Alternate gene names: 37521189

Gene position: 1736534-1736313 (Counterclockwise)

Preceding gene: 37521190

Following gene: 37521188

Centisome position: 37.27

GC content: 60.81

Gene sequence:

>222_bases
ATGAACCAGCCGGTGGTTGAAACCGCAGAGTTGATGCGCCGCGTCGAGCAACTGGTCGACGCCGCCGCCAACCGCTATCG
CATCACCGTCCAGGTGGCCAACCGCGCCAAGCGCCGCCGCTACGAAGATCTCAACGACGACGACGGCAACTTCAAACCGG
TGCTGCGGGCCATCTTCGAGATGTCCGACGAAATGAACGAGCCTGAAATCATCGGCGATTGA

Upstream 100 bases:

>100_bases
GAACTGGCCCTAGCCGACCGCTTCGATCACCAGGTGGTCAACGACAAACTGGCGGCGGCCGTCGAAGCAGTAGAACGTCT
GTTGTTTGAGGAAATACCCG

Downstream 100 bases:

>100_bases
GCCGTTCGGCGTGGAACTGCCCTTCGTTTACAGCCCCCGCTACGAGGCGAACCTGCCCCCCGCCCACCGCTTTCCAATGG
GCAAATTCAGCCGCCTCCAC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MNQPVVETAELMRRVEQLVDAAANRYRITVQVANRAKRRRYEDLNDDDGNFKPVLRAIFEMSDEMNEPEIIGD

Sequences:

>Translated_73_residues
MNQPVVETAELMRRVEQLVDAAANRYRITVQVANRAKRRRYEDLNDDDGNFKPVLRAIFEMSDEMNEPEIIGD
>Mature_73_residues
MNQPVVETAELMRRVEQLVDAAANRYRITVQVANRAKRRRYEDLNDDDGNFKPVLRAIFEMSDEMNEPEIIGD

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_GLOVI (Q7NK60)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_924566.1
- GeneID:   2598493
- GenomeReviews:   BA000045_GR
- KEGG:   gvi:gsl1620
- NMPDR:   fig|251221.1.peg.1620
- HOGENOM:   HBG284825
- OMA:   RYRITVQ
- ProtClustDB:   PRK00392
- BioCyc:   GVIO251221:GSL1620-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6

EC number: =2.7.7.6

Molecular weight: Translated: 8525; Mature: 8525

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPVVETAELMRRVEQLVDAAANRYRITVQVANRAKRRRYEDLNDDDGNFKPVLRAIFE
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
MSDEMNEPEIIGD
HHHCCCCCCCCCC
>Mature Secondary Structure
MNQPVVETAELMRRVEQLVDAAANRYRITVQVANRAKRRRYEDLNDDDGNFKPVLRAIFE
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
MSDEMNEPEIIGD
HHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292