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The map label for this gene is 37520588

Identifier: 37520588

GI number: 37520588

Start: 1093697

End: 1095460

Strand: Direct

Name: 37520588

Synonym: glr1019

Alternate gene names: NA

Gene position: 1093697-1095460 (Clockwise)

Preceding gene: 37520587

Following gene: 37520603

Centisome position: 23.47

GC content: 62.87

Gene sequence:

>1764_bases
ATGGCTGAAAGCCCGAACCAGACTGTTTCGCCCCTACGCATCACTCCCCTCGGTGGGCTGGGAGAAATCGGCAAGAATAC
CTGGATCTTCCAGGTCAACGACGAAATTATGCTCCTCGATGGGGGTCTGTCGTTTCCGACCGAGGAGATGCACGGCGTGA
ACCTGGTGCTGCCCAATATCGATTGGCTGATCGAAAACCAGGAAAAAATCGTCGGTATGGTGGTCACCCACGGCCACGAG
GACCACATCGGCGGCATTCCCTATCACCTGCAGCGGCTGCGCATCCCGGTCATCCATGGACCGCGCCTGGCGATGGCTCT
ACTTGAAGACAAACTGCGGGAGGCGGAGCTGTTGGGCCGCACCCAACTGCAGACGGTCGGGCCGCGCGGCACCGTGCGCG
TGGGCAAGTACTTTCTGGTCGAGTACCTGCAAAACACCCACTCGATGGCCGATTCCTACACCCTGGCCATCCACACCCCG
GTAGGGGTGGTGATGCACACGGGCGATTTCAAGTTCGACCATACACCCGTGGACGGCCGCAAATTCGACTACCAGCGGCT
TGCCGAATACGGCGAGAAGGGCGTGCTGTGTCTGATCAGCGATTCGACCAACGCCGAGGTGCCGGGCTTTACGCCCTCCG
AGCGCTCGGTCTACCCCAATCTCGAGCGCTACATCAAAGAAGCCCCCGGTCGGGTGATCGTGACGACGTTTGCTTCTTCG
GTCCACCGCATCCACATGTTGCTCGACATCGCCCAGAAGACGGGCCGCTCGGTGTGCGTCGTGGGCCGCTCAATGCTTAA
CATGATCGCCAAGGCCAAGGCCTTGGGATTTATTCCCAACTTTTCAGACTCGCTCCTCCAGCCGGTTCAGGCCGCCAATA
GCCTGCCTGCCGAGCGGGTGCTGGTGCTCACCACCGGTTCGCAGGGCGAGCCGATGTCGGCCCTTACCCGCATCGCGGGT
GGCGATCACCGCCAGGTCAAAATCCAGCCGGGCGACACGGTGATCTTCTCGTCCAATCCGATCCCCGGCAACACGATCTC
GGTGGTGCGCGTCATCGACAAACTGATGCAACTGGGGGCCAACGTCGTCTACGGTCGCGAGCGCGGCATTCACGTGAGCG
GCCATGGGGCCATCGAAGATCAAAAGCTGATGCTCGCCCTCACCAAACCCAAGTTCTTCTTTCCCTGCCACGGCGAGTAC
CGGATGATCCGCCGCCACGCCCAGACCGCCCAGGAGATGGGCGTACCGGCCGCAAACATGTTGCTTACCGAGAACGGTGA
CGTGGTCGAACTCACCCCCGAGTCGATGCGCGTCGTCGATCGCATCCCGGCCGGGGTGGACCTGGTGGACGCGAGCCGCT
CGACGATGGTCAACAGCAACGTCCTGCGCGAGCGCCAGCGCCTGGCTGAGGACGGCTTTGTGACCGTGGCGATCGCCCTC
ACCCCCCAGGGAACCTTTGCCGCCCGGCCCCAGATCTCGATCAAAGCGGTGGCCCGCTCCGCCGAGACGCGCAACCTCGA
AGACATGCTGCGCACCGCCCTCGAACGCACCCAGGGCCGCTTCGGCGAATTTCGCCAGCCGCTCGAAGCCGGCGCCTTGG
GCTACCAGTACGACTGGATGGGGATCAAGCAGCTATTGGAGCGCACCGTCAAGCAGGTGACCCGCGAGATGCTCCAGAGC
CACCCGCTCATTCAGGTGCTCCTGCAGACGCCGCTGGAGGCTCCTGTGACCAGTTTGCCGCTCGCTGTAGCGACCTCGGC
GTAG

Upstream 100 bases:

>100_bases
CGGCTTGAAAAGCTTTTGCACCAGCTTGAACTGCTGGTCTGAGCGGTCCGTCCGACCGCATCTTTACCACGACAACACCG
CACACAAGGAACCTTATAAT

Downstream 100 bases:

>100_bases
GGACCGGTTCGGGGTGCAGTGTCAGGGAGTTTGCGGGTCCGTTTTGGGCTTGGGAAGCTCCCAGATTTTGCGCCAGGGGT
TCCAGAACATCACCAAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 587; Mature: 586

Protein sequence:

>587_residues
MAESPNQTVSPLRITPLGGLGEIGKNTWIFQVNDEIMLLDGGLSFPTEEMHGVNLVLPNIDWLIENQEKIVGMVVTHGHE
DHIGGIPYHLQRLRIPVIHGPRLAMALLEDKLREAELLGRTQLQTVGPRGTVRVGKYFLVEYLQNTHSMADSYTLAIHTP
VGVVMHTGDFKFDHTPVDGRKFDYQRLAEYGEKGVLCLISDSTNAEVPGFTPSERSVYPNLERYIKEAPGRVIVTTFASS
VHRIHMLLDIAQKTGRSVCVVGRSMLNMIAKAKALGFIPNFSDSLLQPVQAANSLPAERVLVLTTGSQGEPMSALTRIAG
GDHRQVKIQPGDTVIFSSNPIPGNTISVVRVIDKLMQLGANVVYGRERGIHVSGHGAIEDQKLMLALTKPKFFFPCHGEY
RMIRRHAQTAQEMGVPAANMLLTENGDVVELTPESMRVVDRIPAGVDLVDASRSTMVNSNVLRERQRLAEDGFVTVAIAL
TPQGTFAARPQISIKAVARSAETRNLEDMLRTALERTQGRFGEFRQPLEAGALGYQYDWMGIKQLLERTVKQVTREMLQS
HPLIQVLLQTPLEAPVTSLPLAVATSA

Sequences:

>Translated_587_residues
MAESPNQTVSPLRITPLGGLGEIGKNTWIFQVNDEIMLLDGGLSFPTEEMHGVNLVLPNIDWLIENQEKIVGMVVTHGHE
DHIGGIPYHLQRLRIPVIHGPRLAMALLEDKLREAELLGRTQLQTVGPRGTVRVGKYFLVEYLQNTHSMADSYTLAIHTP
VGVVMHTGDFKFDHTPVDGRKFDYQRLAEYGEKGVLCLISDSTNAEVPGFTPSERSVYPNLERYIKEAPGRVIVTTFASS
VHRIHMLLDIAQKTGRSVCVVGRSMLNMIAKAKALGFIPNFSDSLLQPVQAANSLPAERVLVLTTGSQGEPMSALTRIAG
GDHRQVKIQPGDTVIFSSNPIPGNTISVVRVIDKLMQLGANVVYGRERGIHVSGHGAIEDQKLMLALTKPKFFFPCHGEY
RMIRRHAQTAQEMGVPAANMLLTENGDVVELTPESMRVVDRIPAGVDLVDASRSTMVNSNVLRERQRLAEDGFVTVAIAL
TPQGTFAARPQISIKAVARSAETRNLEDMLRTALERTQGRFGEFRQPLEAGALGYQYDWMGIKQLLERTVKQVTREMLQS
HPLIQVLLQTPLEAPVTSLPLAVATSA
>Mature_586_residues
AESPNQTVSPLRITPLGGLGEIGKNTWIFQVNDEIMLLDGGLSFPTEEMHGVNLVLPNIDWLIENQEKIVGMVVTHGHED
HIGGIPYHLQRLRIPVIHGPRLAMALLEDKLREAELLGRTQLQTVGPRGTVRVGKYFLVEYLQNTHSMADSYTLAIHTPV
GVVMHTGDFKFDHTPVDGRKFDYQRLAEYGEKGVLCLISDSTNAEVPGFTPSERSVYPNLERYIKEAPGRVIVTTFASSV
HRIHMLLDIAQKTGRSVCVVGRSMLNMIAKAKALGFIPNFSDSLLQPVQAANSLPAERVLVLTTGSQGEPMSALTRIAGG
DHRQVKIQPGDTVIFSSNPIPGNTISVVRVIDKLMQLGANVVYGRERGIHVSGHGAIEDQKLMLALTKPKFFFPCHGEYR
MIRRHAQTAQEMGVPAANMLLTENGDVVELTPESMRVVDRIPAGVDLVDASRSTMVNSNVLRERQRLAEDGFVTVAIALT
PQGTFAARPQISIKAVARSAETRNLEDMLRTALERTQGRFGEFRQPLEAGALGYQYDWMGIKQLLERTVKQVTREMLQSH
PLIQVLLQTPLEAPVTSLPLAVATSA

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 64682; Mature: 64550

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESPNQTVSPLRITPLGGLGEIGKNTWIFQVNDEIMLLDGGLSFPTEEMHGVNLVLPNI
CCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHCCCEEEECCC
DWLIENQEKIVGMVVTHGHEDHIGGIPYHLQRLRIPVIHGPRLAMALLEDKLREAELLGR
CEEECCCCEEEEEEEECCCCCCCCCCCHHHHHEEECEEECCHHHHHHHHHHHHHHHHHCC
TQLQTVGPRGTVRVGKYFLVEYLQNTHSMADSYTLAIHTPVGVVMHTGDFKFDHTPVDGR
HHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCEECCCCCCCC
KFDYQRLAEYGEKGVLCLISDSTNAEVPGFTPSERSVYPNLERYIKEAPGRVIVTTFASS
CCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHH
VHRIHMLLDIAQKTGRSVCVVGRSMLNMIAKAKALGFIPNFSDSLLQPVQAANSLPAERV
HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEE
LVLTTGSQGEPMSALTRIAGGDHRQVKIQPGDTVIFSSNPIPGNTISVVRVIDKLMQLGA
EEEEECCCCCCHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
NVVYGRERGIHVSGHGAIEDQKLMLALTKPKFFFPCHGEYRMIRRHAQTAQEMGVPAANM
CEEEECCCCEEECCCCCCCCCEEEEEEECCCEEECCCCHHHHHHHHHHHHHHHCCCHHHE
LLTENGDVVELTPESMRVVDRIPAGVDLVDASRSTMVNSNVLRERQRLAEDGFVTVAIAL
EEECCCCEEEECHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEE
TPQGTFAARPQISIKAVARSAETRNLEDMLRTALERTQGRFGEFRQPLEAGALGYQYDWM
CCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHCCHHHCCCCEEECHH
GIKQLLERTVKQVTREMLQSHPLIQVLLQTPLEAPVTSLPLAVATSA
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHCCEEEECCC
>Mature Secondary Structure 
AESPNQTVSPLRITPLGGLGEIGKNTWIFQVNDEIMLLDGGLSFPTEEMHGVNLVLPNI
CCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHCCCEEEECCC
DWLIENQEKIVGMVVTHGHEDHIGGIPYHLQRLRIPVIHGPRLAMALLEDKLREAELLGR
CEEECCCCEEEEEEEECCCCCCCCCCCHHHHHEEECEEECCHHHHHHHHHHHHHHHHHCC
TQLQTVGPRGTVRVGKYFLVEYLQNTHSMADSYTLAIHTPVGVVMHTGDFKFDHTPVDGR
HHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCEECCCCCCCC
KFDYQRLAEYGEKGVLCLISDSTNAEVPGFTPSERSVYPNLERYIKEAPGRVIVTTFASS
CCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHH
VHRIHMLLDIAQKTGRSVCVVGRSMLNMIAKAKALGFIPNFSDSLLQPVQAANSLPAERV
HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEE
LVLTTGSQGEPMSALTRIAGGDHRQVKIQPGDTVIFSSNPIPGNTISVVRVIDKLMQLGA
EEEEECCCCCCHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
NVVYGRERGIHVSGHGAIEDQKLMLALTKPKFFFPCHGEYRMIRRHAQTAQEMGVPAANM
CEEEECCCCEEECCCCCCCCCEEEEEEECCCEEECCCCHHHHHHHHHHHHHHHCCCHHHE
LLTENGDVVELTPESMRVVDRIPAGVDLVDASRSTMVNSNVLRERQRLAEDGFVTVAIAL
EEECCCCEEEECHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEE
TPQGTFAARPQISIKAVARSAETRNLEDMLRTALERTQGRFGEFRQPLEAGALGYQYDWM
CCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHCCHHHCCCCEEECHH
GIKQLLERTVKQVTREMLQSHPLIQVLLQTPLEAPVTSLPLAVATSA
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]