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The map label for this gene is psbF

Identifier: 37520426

GI number: 37520426

Start: 905972

End: 906127

Strand: Direct

Name: psbF

Synonym: gvip110

Alternate gene names: 37520426

Gene position: 905972-906127 (Clockwise)

Preceding gene: 37520425

Following gene: 37520427

Centisome position: 19.45

GC content: 66.03

Gene sequence:

>156_bases
ATGACCACTTCTTCGAACCGTCCCACCCCCGGTGGCCCGACCCAGCCCGTCTCCTACCCGGTCTTCACCGTCCGCTGGCT
GGCGGTCCACGCCCTGACCGTGCCCACGATCTTCTTCCTGGGCGCTCTGGCCGCGATGCAGTTTATCCAGCGCTAA

Upstream 100 bases:

>100_bases
TCCGACAACACCAAAAAGCCGCTGGTGAACAAGCGCTTCGAGGCGAAGCAGCAGCTGGACGAAGCCACCAAGAACAAATA
ATTTTGCAGGAAGCACTGTC

Downstream 100 bases:

>100_bases
GACGGAGAAAATCTCGTGTCCAAAGATCCGAAAAATCCTGGCGTCGAGCTGAACCGCACTTCCCTGTACATGGGCCTGGT
GCTGGTGCTCGTGATCATCT

Product: cytochrome b559 subunit beta

Products: NA

Alternate protein names: PSII reaction center subunit VI

Number of amino acids: Translated: 51; Mature: 50

Protein sequence:

>51_residues
MTTSSNRPTPGGPTQPVSYPVFTVRWLAVHALTVPTIFFLGALAAMQFIQR

Sequences:

>Translated_51_residues
MTTSSNRPTPGGPTQPVSYPVFTVRWLAVHALTVPTIFFLGALAAMQFIQR
>Mature_50_residues
TTSSNRPTPGGPTQPVSYPVFTVRWLAVHALTVPTIFFLGALAAMQFIQR

Specific function: This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbE/psbF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBF_GLOVI (Q7NMA9)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_923803.1
- ProteinModelPortal:   Q7NMA9
- SMR:   Q7NMA9
- GeneID:   2599283
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.857
- HOGENOM:   HBG559004
- ProtClustDB:   PRK02561
- BioCyc:   GVIO251221:GSR0857-MONOMER
- GO:   GO:0009536
- GO:   GO:0006810
- HAMAP:   MF_00643
- InterPro:   IPR006241
- InterPro:   IPR006216
- InterPro:   IPR013081
- PIRSF:   PIRSF000037
- TIGRFAMs:   TIGR01333

Pfam domain/function: PF00283 Cytochrom_B559

EC number: NA

Molecular weight: Translated: 5576; Mature: 5444

Theoretical pI: Translated: 12.21; Mature: 12.21

Prosite motif: PS00537 CYTOCHROME_B559

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1261fb14)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSSNRPTPGGPTQPVSYPVFTVRWLAVHALTVPTIFFLGALAAMQFIQR
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
>Mature Secondary Structure 
TTSSNRPTPGGPTQPVSYPVFTVRWLAVHALTVPTIFFLGALAAMQFIQR
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292