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The map label for this gene is ycf48

Identifier: 37520424

GI number: 37520424

Start: 904652

End: 905623

Strand: Direct

Name: ycf48

Synonym: gvip108

Alternate gene names: NA

Gene position: 904652-905623 (Clockwise)

Preceding gene: 37520423

Following gene: 37520425

Centisome position: 19.42

GC content: 63.68

Gene sequence:

>972_bases
ATGGGCAAATGGAGCGGGCTGGGGCTGGGGTTGCTGCTGCTGGTGCTCGCCGGTTGCGGGGCGCCTCCCCTCGAGCGCGA
TGAATGGAAAGTGATCCCGACGGGTCTTTCCGATAAGGCCGATTTGCTGGATATCGCTTTTGTCGACGACAAGAACGGCT
GGGCGGTAGGCAGCCGCTCGACGCTGCTGCGCACCGCCGACGGTGGTGAGAGCTGGACCGCCGTCCCCGTCAAGCTCGAT
TCGGATTCGCGCTTTTTGTCGGTGAGCTTCGACGGCAAAAACGGCTGGATAGGCGGCGAACCGAAGCGGCTGTTGCGCAC
CGTCAACGGTGGCGCAAGCTGGACGTCGATCACCCTCGATCAGCGCCTGCCGGGTAGCCCCCTCAAAGTTTATGCCCTTG
GTGCCGACACCGCCGAAGTCGTGCTCAATTCGGGCCTGGTGATCAAGACCGTCAACGGCGGCAAGAACTGGCAGGTGGTT
ACCCCGGCCTCAGCGGGCGGCATCCGCAGCGCCGAGCGCGTCGCCGACGGTTCCTACTGGGTGGTCTCCACTCGGGGCGG
CTCCTATTTGCAATGGAAGCCCGGCGATCCGCAGTGGACCAACTACGAACGCACCAGTTCCCGGCGCATCCAGGCGATGG
GCTTTAGCAGCGGCAAAGCCGGCTGGATGATCAACCAGGGCGGCGAGATGCAATTTACCGCCAACCAGGGCGAAACCTGG
ACGCCGGGCCGCTCGGTGATCCTCAACGGCCTCAGTCTGCTCGACGCCGACTACACCGCCGCCGACAAAAAAATCTGGGC
GGCGGGCGGCGGCGGCACGCTCATCGTCAGCGCCGACGACGGCCAGAACTGGAAGGCTGAGGAGGTTCCCGGCATCAAAG
GCAGCCTGCTTAACGTCGAATTTATCGGCAACAAAGGCTTCGTGTTGGGCCAGAACGGCGTGTTGCTCAAATACCGGGGG
GCCGCAGATTAA

Upstream 100 bases:

>100_bases
GTCAATGTCCTCAACGCCCAGACCAAGAACGTCTTGATCTTTGGCGCTTTGTTCTTGGGTTTTCTGTTTTTCATGAGCAT
CTATTTTTTGGGCAACTGAC

Downstream 100 bases:

>100_bases
ATTCTTGTTGTCTCGTGTAATGTTCCGTATCATTGTGTAAAATTGCAGTCAAGAGTCCTGGGAGGCCTTATCTTATGTCG
AGCCGCAGCACTGGCGAGCG

Product: Ycf48-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MGKWSGLGLGLLLLVLAGCGAPPLERDEWKVIPTGLSDKADLLDIAFVDDKNGWAVGSRSTLLRTADGGESWTAVPVKLD
SDSRFLSVSFDGKNGWIGGEPKRLLRTVNGGASWTSITLDQRLPGSPLKVYALGADTAEVVLNSGLVIKTVNGGKNWQVV
TPASAGGIRSAERVADGSYWVVSTRGGSYLQWKPGDPQWTNYERTSSRRIQAMGFSSGKAGWMINQGGEMQFTANQGETW
TPGRSVILNGLSLLDADYTAADKKIWAAGGGGTLIVSADDGQNWKAEEVPGIKGSLLNVEFIGNKGFVLGQNGVLLKYRG
AAD

Sequences:

>Translated_323_residues
MGKWSGLGLGLLLLVLAGCGAPPLERDEWKVIPTGLSDKADLLDIAFVDDKNGWAVGSRSTLLRTADGGESWTAVPVKLD
SDSRFLSVSFDGKNGWIGGEPKRLLRTVNGGASWTSITLDQRLPGSPLKVYALGADTAEVVLNSGLVIKTVNGGKNWQVV
TPASAGGIRSAERVADGSYWVVSTRGGSYLQWKPGDPQWTNYERTSSRRIQAMGFSSGKAGWMINQGGEMQFTANQGETW
TPGRSVILNGLSLLDADYTAADKKIWAAGGGGTLIVSADDGQNWKAEEVPGIKGSLLNVEFIGNKGFVLGQNGVLLKYRG
AAD
>Mature_322_residues
GKWSGLGLGLLLLVLAGCGAPPLERDEWKVIPTGLSDKADLLDIAFVDDKNGWAVGSRSTLLRTADGGESWTAVPVKLDS
DSRFLSVSFDGKNGWIGGEPKRLLRTVNGGASWTSITLDQRLPGSPLKVYALGADTAEVVLNSGLVIKTVNGGKNWQVVT
PASAGGIRSAERVADGSYWVVSTRGGSYLQWKPGDPQWTNYERTSSRRIQAMGFSSGKAGWMINQGGEMQFTANQGETWT
PGRSVILNGLSLLDADYTAADKKIWAAGGGGTLIVSADDGQNWKAEEVPGIKGSLLNVEFIGNKGFVLGQNGVLLKYRGA
AD

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YC48L_GLOVI (Q7NMB1)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_923801.1
- ProteinModelPortal:   Q7NMB1
- GeneID:   2599281
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.855
- HOGENOM:   HBG285032
- OMA:   GFLVGSN
- ProtClustDB:   PRK13684
- BioCyc:   GVIO251221:GLR0855-MONOMER
- HAMAP:   MF_01348
- InterPro:   IPR002860
- InterPro:   IPR016705
- PIRSF:   PIRSF017875

Pfam domain/function: PF02012 BNR

EC number: NA

Molecular weight: Translated: 34247; Mature: 34116

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKWSGLGLGLLLLVLAGCGAPPLERDEWKVIPTGLSDKADLLDIAFVDDKNGWAVGSRS
CCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEECCCC
TLLRTADGGESWTAVPVKLDSDSRFLSVSFDGKNGWIGGEPKRLLRTVNGGASWTSITLD
EEEEECCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHEECCCCCCEEEEEEC
QRLPGSPLKVYALGADTAEVVLNSGLVIKTVNGGKNWQVVTPASAGGIRSAERVADGSYW
CCCCCCCEEEEEECCCHHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCHHHHCCCCEE
VVSTRGGSYLQWKPGDPQWTNYERTSSRRIQAMGFSSGKAGWMINQGGEMQFTANQGETW
EEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCC
TPGRSVILNGLSLLDADYTAADKKIWAAGGGGTLIVSADDGQNWKAEEVPGIKGSLLNVE
CCCHHEEECCHHEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHCCCCCCCCEEEEE
FIGNKGFVLGQNGVLLKYRGAAD
EECCCCEEECCCCEEEEECCCCC
>Mature Secondary Structure 
GKWSGLGLGLLLLVLAGCGAPPLERDEWKVIPTGLSDKADLLDIAFVDDKNGWAVGSRS
CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEECCCC
TLLRTADGGESWTAVPVKLDSDSRFLSVSFDGKNGWIGGEPKRLLRTVNGGASWTSITLD
EEEEECCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHEECCCCCCEEEEEEC
QRLPGSPLKVYALGADTAEVVLNSGLVIKTVNGGKNWQVVTPASAGGIRSAERVADGSYW
CCCCCCCEEEEEECCCHHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCHHHHCCCCEE
VVSTRGGSYLQWKPGDPQWTNYERTSSRRIQAMGFSSGKAGWMINQGGEMQFTANQGETW
EEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCC
TPGRSVILNGLSLLDADYTAADKKIWAAGGGGTLIVSADDGQNWKAEEVPGIKGSLLNVE
CCCHHEEECCHHEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHCCCCCCCCEEEEE
FIGNKGFVLGQNGVLLKYRGAAD
EECCCCEEECCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292