Click here to switch to the map view.

The map label for this gene is rub [H]

Identifier: 37520423

GI number: 37520423

Start: 904315

End: 904650

Strand: Direct

Name: rub [H]

Synonym: gvip107

Alternate gene names: 37520423

Gene position: 904315-904650 (Clockwise)

Preceding gene: 37520420

Following gene: 37520424

Centisome position: 19.41

GC content: 58.63

Gene sequence:

>336_bases
ATGACGACCCAGATTACCGACCCAACGCAACTCGACCGCTACGAGTGCCGTACCTGCGGCTACATCTACGAGCCGACCAA
GGGTGACGCTACGGTACCGGCGGGCACACCCTTCGAGGAACTCGCCGCCGACTGGCGCTGTCCGATTTGCTCCTCGGCCA
CCAGCCGCTTCAAAAGCATCGGCCCGAAGGTGGGAACGGTGGCCGGGTTCGAGGAGAACGCCGGCTACGGCTGGGGTGTC
AATGTCCTCAACGCCCAGACCAAGAACGTCTTGATCTTTGGCGCTTTGTTCTTGGGTTTTCTGTTTTTCATGAGCATCTA
TTTTTTGGGCAACTGA

Upstream 100 bases:

>100_bases
GTCAAATCGTGGCACAAAGCGGAGGGAGGGGGTATCCTCTATAGTGAAGAGAAATTAAGTTTTTCTTCATATTTAGCCCG
TCGCTTTGCTGCCAACCGCC

Downstream 100 bases:

>100_bases
CATGGGCAAATGGAGCGGGCTGGGGCTGGGGTTGCTGCTGCTGGTGCTCGCCGGTTGCGGGGCGCCTCCCCTCGAGCGCG
ATGAATGGAAAGTGATCCCG

Product: rubredoxin

Products: NA

Alternate protein names: Rd [H]

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MTTQITDPTQLDRYECRTCGYIYEPTKGDATVPAGTPFEELAADWRCPICSSATSRFKSIGPKVGTVAGFEENAGYGWGV
NVLNAQTKNVLIFGALFLGFLFFMSIYFLGN

Sequences:

>Translated_111_residues
MTTQITDPTQLDRYECRTCGYIYEPTKGDATVPAGTPFEELAADWRCPICSSATSRFKSIGPKVGTVAGFEENAGYGWGV
NVLNAQTKNVLIFGALFLGFLFFMSIYFLGN
>Mature_110_residues
TTQITDPTQLDRYECRTCGYIYEPTKGDATVPAGTPFEELAADWRCPICSSATSRFKSIGPKVGTVAGFEENAGYGWGVN
VLNAQTKNVLIFGALFLGFLFFMSIYFLGN

Specific function: Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. Could be involved in hydrogenase-linked redox processes [

COG id: COG1773

COG function: function code C; Rubredoxin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rubredoxin-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004039 [H]

Pfam domain/function: PF00301 Rubredoxin [H]

EC number: NA

Molecular weight: Translated: 12167; Mature: 12036

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50903 RUBREDOXIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQITDPTQLDRYECRTCGYIYEPTKGDATVPAGTPFEELAADWRCPICSSATSRFKSI
CCCCCCCCCCCCCHHHHHCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHC
GPKVGTVAGFEENAGYGWGVNVLNAQTKNVLIFGALFLGFLFFMSIYFLGN
CCCCCEECCCCCCCCCCCCCEEECCCCCCEEHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTQITDPTQLDRYECRTCGYIYEPTKGDATVPAGTPFEELAADWRCPICSSATSRFKSI
CCCCCCCCCCCCHHHHHCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHC
GPKVGTVAGFEENAGYGWGVNVLNAQTKNVLIFGALFLGFLFFMSIYFLGN
CCCCCEECCCCCCCCCCCCCEEECCCCCCEEHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA