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The map label for this gene is lrtA [H]

Identifier: 37520355

GI number: 37520355

Start: 839102

End: 839665

Strand: Direct

Name: lrtA [H]

Synonym: glr0786

Alternate gene names: 37520355

Gene position: 839102-839665 (Clockwise)

Preceding gene: 37520354

Following gene: 37520358

Centisome position: 18.01

GC content: 56.03

Gene sequence:

>564_bases
ATGCAATTTGCCATCCACGGAAAGAATATCGAAGTCACCGAACCGATTCGTGACTACGTCAGTTCCAAACTGGATAAAGT
GTTCGCCCACTTTGATCAGTTGACGATGGGTGTCGATGTCTATCTTTCTGTGGCACGCAATCCGCGCATTTCCCGCAGCC
ATTCGGCGGAGGTGACCGTCCAGGCCAGCGGTACGATCATCCGTGCCGAGGAAGAAACCGAAAATTTGTACGCCAGCATC
GACCTGGTCGCCGACAAATTGCACCGGCAAATGCGCAAGTACAAAGAACGAATGCAAAAAAAACCGAAGCCCAAGACCGG
TCTGGCGGTGGCCAACCAGGCGCCGATTAGTCTTCCCAATGGCGATGAGAAGGCGACGGCGCTGCCCAAAGAAGTCGTGC
GCACCAAGTACTTCGCCATGCCGCCGATGAGCCCCGAGGAGGCCCTCGATCACCTGGCGCTGGTGGATCACGATTTTTTT
GTCTTCCGCAACGCCGAGAGCGGTGAAATCAATGTGCTCTACGCGCGCAACCACGGCGGCTACGGCCTGATTGTGCCCAG
GTAG

Upstream 100 bases:

>100_bases
GCGGATGCTAACGTAAATGGAACATCTCAACGTCCCGGAAACCGCGGCTCAGGAGAAAGTCGGCCGCTTCCGGGGCCTCG
TGTCACCACAGGAGGCGTTT

Downstream 100 bases:

>100_bases
ATTCCCCCGTCGGCCCCCTCAAGGTTTGAGGGGGGCCGGGGGGAGCGCCACATCGACGCGCGGGGCGTGGCCCCAGAAAG
CTTCGAGCTGATAAAATTCG

Product: light-repressed protein LrtA-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MQFAIHGKNIEVTEPIRDYVSSKLDKVFAHFDQLTMGVDVYLSVARNPRISRSHSAEVTVQASGTIIRAEEETENLYASI
DLVADKLHRQMRKYKERMQKKPKPKTGLAVANQAPISLPNGDEKATALPKEVVRTKYFAMPPMSPEEALDHLALVDHDFF
VFRNAESGEINVLYARNHGGYGLIVPR

Sequences:

>Translated_187_residues
MQFAIHGKNIEVTEPIRDYVSSKLDKVFAHFDQLTMGVDVYLSVARNPRISRSHSAEVTVQASGTIIRAEEETENLYASI
DLVADKLHRQMRKYKERMQKKPKPKTGLAVANQAPISLPNGDEKATALPKEVVRTKYFAMPPMSPEEALDHLALVDHDFF
VFRNAESGEINVLYARNHGGYGLIVPR
>Mature_187_residues
MQFAIHGKNIEVTEPIRDYVSSKLDKVFAHFDQLTMGVDVYLSVARNPRISRSHSAEVTVQASGTIIRAEEETENLYASI
DLVADKLHRQMRKYKERMQKKPKPKTGLAVANQAPISLPNGDEKATALPKEVVRTKYFAMPPMSPEEALDHLALVDHDFF
VFRNAESGEINVLYARNHGGYGLIVPR

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=100, Percent_Identity=35, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21048; Mature: 21048

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFAIHGKNIEVTEPIRDYVSSKLDKVFAHFDQLTMGVDVYLSVARNPRISRSHSAEVTV
CEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCCCCEEEE
QASGTIIRAEEETENLYASIDLVADKLHRQMRKYKERMQKKPKPKTGLAVANQAPISLPN
EECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCC
GDEKATALPKEVVRTKYFAMPPMSPEEALDHLALVDHDFFVFRNAESGEINVLYARNHGG
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCC
YGLIVPR
EEEEECC
>Mature Secondary Structure
MQFAIHGKNIEVTEPIRDYVSSKLDKVFAHFDQLTMGVDVYLSVARNPRISRSHSAEVTV
CEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCCCCEEEE
QASGTIIRAEEETENLYASIDLVADKLHRQMRKYKERMQKKPKPKTGLAVANQAPISLPN
EECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCC
GDEKATALPKEVVRTKYFAMPPMSPEEALDHLALVDHDFFVFRNAESGEINVLYARNHGG
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCC
YGLIVPR
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]