| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is yceH [C]
Identifier: 34499758
GI number: 34499758
Start: 4644069
End: 4644731
Strand: Direct
Name: yceH [C]
Synonym: CV_4303
Alternate gene names: 34499758
Gene position: 4644069-4644731 (Clockwise)
Preceding gene: 34499757
Following gene: 34499759
Centisome position: 97.75
GC content: 69.53
Gene sequence:
>663_bases ATGATGACAGCATTGTCTTGCCATGGAGGATGTATGGACACGCACCAACTCGACGCGGCGGAAGTGCGCGTGCTGGGCGC GCTGCTGGAAAAGCAGGCGCTGACGCCCGACGCCTATCCGCTGACGCTGAACGCCCTCGTCGGCGCCTGCAACCAGTTGA CCAGCCGCGAGCCGGTGATGCAGCTGTCCGAGTCCGACGCCAGCGCCGCGCTGGACGCGCTGATCGCCAAGAAGCTGGTC GCCGAGCGGCTGCCGGCCGGCAGCCGGGTCGCCAAGTACGAGCACCGCCTCAATTACGAGTGGAACATAGACGGCGCGCG CCTGGCCGCGCTATGCCTGCTGACGCTGCGCGGCCCGCAGACCAGTGCCGAGATCCGCGCCCGCGCCGGCCGCATCTACA GCTTCTCCGGCGTGGACGAGGTCGAGACGGCGCTGAACGCGCTGGCCGACAAGTACCCGCCGCTGGCGGCGAAGTTGGAG CGCCAGCCGGGCGAGCGCGAGGCGCGCTGGTGCCATTTGCTGTCCGGCGAGCCGCAAATCCTCCCGGCCCAGGCCTGCGA AGTGATAGACGTGGGCCTGACCGGCCGCGTGGCGGCGCTGGAAGCCGAAGTGTCGGCGCTGAAGGCGATGGTGCTGGCGC TGGAGCAGCGGCTGAACGGCTGA
Upstream 100 bases:
>100_bases CAGCCGGCTGCGCCAGATCCGCCGCCTGCGCCAGTTGGAGGCGCTGGAGAAACGTCTGCCGGATTGAGCCGGCTTCGGGA CGGCAGGCCGATTTGATGCG
Downstream 100 bases:
>100_bases GCCGCGCCGTCGCGATGTCCGCGCGCAAGGCCCGGCCCCGCCGGGCCTTGCCGTTGGCGGTGGAGCCGGACGGCATGCCG TCCCGGGGCCGCGCGCTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 220; Mature: 220
Protein sequence:
>220_residues MMTALSCHGGCMDTHQLDAAEVRVLGALLEKQALTPDAYPLTLNALVGACNQLTSREPVMQLSESDASAALDALIAKKLV AERLPAGSRVAKYEHRLNYEWNIDGARLAALCLLTLRGPQTSAEIRARAGRIYSFSGVDEVETALNALADKYPPLAAKLE RQPGEREARWCHLLSGEPQILPAQACEVIDVGLTGRVAALEAEVSALKAMVLALEQRLNG
Sequences:
>Translated_220_residues MMTALSCHGGCMDTHQLDAAEVRVLGALLEKQALTPDAYPLTLNALVGACNQLTSREPVMQLSESDASAALDALIAKKLV AERLPAGSRVAKYEHRLNYEWNIDGARLAALCLLTLRGPQTSAEIRARAGRIYSFSGVDEVETALNALADKYPPLAAKLE RQPGEREARWCHLLSGEPQILPAQACEVIDVGLTGRVAALEAEVSALKAMVLALEQRLNG >Mature_220_residues MMTALSCHGGCMDTHQLDAAEVRVLGALLEKQALTPDAYPLTLNALVGACNQLTSREPVMQLSESDASAALDALIAKKLV AERLPAGSRVAKYEHRLNYEWNIDGARLAALCLLTLRGPQTSAEIRARAGRIYSFSGVDEVETALNALADKYPPLAAKLE RQPGEREARWCHLLSGEPQILPAQACEVIDVGLTGRVAALEAEVSALKAMVLALEQRLNG
Specific function: Unknown
COG id: COG3132
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0502 family
Homologues:
Organism=Escherichia coli, GI1787306, Length=201, Percent_Identity=46.2686567164179, Blast_Score=167, Evalue=6e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4303_CHRVO (Q7NQ37)
Other databases:
- EMBL: AE016825 - RefSeq: NP_903973.1 - ProteinModelPortal: Q7NQ37 - SMR: Q7NQ37 - GeneID: 2549518 - GenomeReviews: AE016825_GR - KEGG: cvi:CV_4303 - NMPDR: fig|243365.1.peg.4303 - HOGENOM: HBG298268 - OMA: TTPDQYP - PhylomeDB: Q7NQ37 - BioCyc: CVIO243365:CV_4303-MONOMER - HAMAP: MF_01584 - InterPro: IPR007432 - InterPro: IPR011991 - Gene3D: G3DSA:1.10.10.10
Pfam domain/function: PF04337 DUF480
EC number: NA
Molecular weight: Translated: 23626; Mature: 23626
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTALSCHGGCMDTHQLDAAEVRVLGALLEKQALTPDAYPLTLNALVGACNQLTSREPVM CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHH QLSESDASAALDALIAKKLVAERLPAGSRVAKYEHRLNYEWNIDGARLAALCLLTLRGPQ HHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEECCCHHHHHHHHHHHCCCCC TSAEIRARAGRIYSFSGVDEVETALNALADKYPPLAAKLERQPGEREARWCHLLSGEPQI CHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHEEHCCCCCCCE LPAQACEVIDVGLTGRVAALEAEVSALKAMVLALEQRLNG EHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MMTALSCHGGCMDTHQLDAAEVRVLGALLEKQALTPDAYPLTLNALVGACNQLTSREPVM CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHH QLSESDASAALDALIAKKLVAERLPAGSRVAKYEHRLNYEWNIDGARLAALCLLTLRGPQ HHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEECCCHHHHHHHHHHHCCCCC TSAEIRARAGRIYSFSGVDEVETALNALADKYPPLAAKLERQPGEREARWCHLLSGEPQI CHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHEEHCCCCCCCE LPAQACEVIDVGLTGRVAALEAEVSALKAMVLALEQRLNG EHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 14500782