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The map label for this gene is yvbU [H]

Identifier: 34499598

GI number: 34499598

Start: 4483551

End: 4484468

Strand: Reverse

Name: yvbU [H]

Synonym: CV_4143

Alternate gene names: 34499598

Gene position: 4484468-4483551 (Counterclockwise)

Preceding gene: 34499610

Following gene: 34499597

Centisome position: 94.39

GC content: 71.02

Gene sequence:

>918_bases
ATGACGCTGACCCAACTGGAAATTTTCGCCCTGGTTGCGGAGATGCAGGGCTTTACCGCCGCCGCCGCGCGGCTGGGGAT
TTCGCAGTCCGGCGTGTCTCACGCGGTGCGCGAGCTCGAGCGCGAGCTGGGCGTGGAATTGCTGCAACGGCGGCAGGGCC
GGGTGGAGCTGACCGACATCGGGCGGCAACTGCTGCCGCGCGCCAGCGGCATGCTGGGCTTGGCCGAGGCGATGCGGCAG
GAGGCGGCCGACGCGCGCGGCCTGCGCCGGGGCACCTTGCGCATCGGCTCGTTCGGGCCGACTTCGTCGATGCGGCTGTT
GCCGGCCTTGTTGGCCCGCTATCGGCAGCAGTATCCGGGCATCGAGGTGCATATCGACGAGGGGCCGGACGAGCAGGTGC
TGCAATGGCTGCTGGAGCGGCGGGTCGACATCGCTTTCGCCGTGTTGCCGGATCCCCGCTTCGTCTGCTGCCCGCTGGTC
GAGGACCAGATGGTGGCGGTGTTGCCGGCGGGCCATCGCCTGGCGGATCGGCCGCGGGTGACCCTGGCCGAGCTGTGCGG
CGAACCGTTCGCCCTCAGCGGCGCCGGCTCGGCCGAACTGGTCATGCGCCTGTTCCAGGCGGCCCGGCTGCAGCCGAACA
TACGCTATCGCTGCGGGCAGCTGCTCAGCACGCTGGATACGGTCGCGCGCGGGGACGCCGTCGCCATCGTCGCCGAACTG
TCGCTGCCGTCGCGGCCGCATGCGGAGGGCTATGTCGGCAAGCCTTTGCAGCCGGCGGTGCGCCGGCAAGTGGGTTTGGC
CTTGCTGGACGGGGATCAAGCGAGCCCGGCGGCGCGCGCCTTTCTGCAGATCGCGGACAGGCTGCGCATCGAGGGCGGGC
TGGCGGGCCTGAACGCGCGGGAAAACGGGGCGGCCTGA

Upstream 100 bases:

>100_bases
ATTCCATGGCGGGCTGAACAAGGTTAGTTTAAGTGGGCATATTCTTATGCCAAATGCGAGTCATGGTAAAATGAGCGATT
GCTCATGATGGGGCGAGGCG

Downstream 100 bases:

>100_bases
TCGATCGGCCAGGTTTTTTATGCCTTGATCATTTAAATTGTCCCCGGTCAAATTGTATTGAATTTCCCTTCCGTAGCATG
CGGCGCTTGTCCGAGTCCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MTLTQLEIFALVAEMQGFTAAAARLGISQSGVSHAVRELERELGVELLQRRQGRVELTDIGRQLLPRASGMLGLAEAMRQ
EAADARGLRRGTLRIGSFGPTSSMRLLPALLARYRQQYPGIEVHIDEGPDEQVLQWLLERRVDIAFAVLPDPRFVCCPLV
EDQMVAVLPAGHRLADRPRVTLAELCGEPFALSGAGSAELVMRLFQAARLQPNIRYRCGQLLSTLDTVARGDAVAIVAEL
SLPSRPHAEGYVGKPLQPAVRRQVGLALLDGDQASPAARAFLQIADRLRIEGGLAGLNARENGAA

Sequences:

>Translated_305_residues
MTLTQLEIFALVAEMQGFTAAAARLGISQSGVSHAVRELERELGVELLQRRQGRVELTDIGRQLLPRASGMLGLAEAMRQ
EAADARGLRRGTLRIGSFGPTSSMRLLPALLARYRQQYPGIEVHIDEGPDEQVLQWLLERRVDIAFAVLPDPRFVCCPLV
EDQMVAVLPAGHRLADRPRVTLAELCGEPFALSGAGSAELVMRLFQAARLQPNIRYRCGQLLSTLDTVARGDAVAIVAEL
SLPSRPHAEGYVGKPLQPAVRRQVGLALLDGDQASPAARAFLQIADRLRIEGGLAGLNARENGAA
>Mature_304_residues
TLTQLEIFALVAEMQGFTAAAARLGISQSGVSHAVRELERELGVELLQRRQGRVELTDIGRQLLPRASGMLGLAEAMRQE
AADARGLRRGTLRIGSFGPTSSMRLLPALLARYRQQYPGIEVHIDEGPDEQVLQWLLERRVDIAFAVLPDPRFVCCPLVE
DQMVAVLPAGHRLADRPRVTLAELCGEPFALSGAGSAELVMRLFQAARLQPNIRYRCGQLLSTLDTVARGDAVAIVAELS
LPSRPHAEGYVGKPLQPAVRRQVGLALLDGDQASPAARAFLQIADRLRIEGGLAGLNARENGAA

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=211, Percent_Identity=35.5450236966825, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=29.8969072164948, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI145693105, Length=285, Percent_Identity=25.6140350877193, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=27.891156462585, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787879, Length=288, Percent_Identity=28.8194444444444, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI157672245, Length=300, Percent_Identity=29.3333333333333, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787806, Length=174, Percent_Identity=32.183908045977, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=30.8641975308642, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786401, Length=145, Percent_Identity=36.551724137931, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=28.9772727272727, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789639, Length=131, Percent_Identity=35.1145038167939, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=134, Percent_Identity=32.8358208955224, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787128, Length=125, Percent_Identity=32, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788296, Length=195, Percent_Identity=29.2307692307692, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787530, Length=250, Percent_Identity=24.8, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789204, Length=245, Percent_Identity=26.9387755102041, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33032; Mature: 32901

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTQLEIFALVAEMQGFTAAAARLGISQSGVSHAVRELERELGVELLQRRQGRVELTDI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHH
GRQLLPRASGMLGLAEAMRQEAADARGLRRGTLRIGSFGPTSSMRLLPALLARYRQQYPG
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHCCEEECCCCCCCHHHHHHHHHHHHHHHCCC
IEVHIDEGPDEQVLQWLLERRVDIAFAVLPDPRFVCCPLVEDQMVAVLPAGHRLADRPRV
EEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCEEEEECCCCCCCCCCCH
TLAELCGEPFALSGAGSAELVMRLFQAARLQPNIRYRCGQLLSTLDTVARGDAVAIVAEL
HHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC
SLPSRPHAEGYVGKPLQPAVRRQVGLALLDGDQASPAARAFLQIADRLRIEGGLAGLNAR
CCCCCCCCCCCCCCCCCHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
ENGAA
CCCCC
>Mature Secondary Structure 
TLTQLEIFALVAEMQGFTAAAARLGISQSGVSHAVRELERELGVELLQRRQGRVELTDI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHH
GRQLLPRASGMLGLAEAMRQEAADARGLRRGTLRIGSFGPTSSMRLLPALLARYRQQYPG
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHCCEEECCCCCCCHHHHHHHHHHHHHHHCCC
IEVHIDEGPDEQVLQWLLERRVDIAFAVLPDPRFVCCPLVEDQMVAVLPAGHRLADRPRV
EEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCEEEEECCCCCCCCCCCH
TLAELCGEPFALSGAGSAELVMRLFQAARLQPNIRYRCGQLLSTLDTVARGDAVAIVAEL
HHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC
SLPSRPHAEGYVGKPLQPAVRRQVGLALLDGDQASPAARAFLQIADRLRIEGGLAGLNAR
CCCCCCCCCCCCCCCCCHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
ENGAA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]