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The map label for this gene is yicC [C]

Identifier: 34499305

GI number: 34499305

Start: 4154774

End: 4155640

Strand: Direct

Name: yicC [C]

Synonym: CV_3850

Alternate gene names: 34499305

Gene position: 4154774-4155640 (Clockwise)

Preceding gene: 34499301

Following gene: 34499306

Centisome position: 87.45

GC content: 63.44

Gene sequence:

>867_bases
ATGATATTGAGCATGACCGGCTTCGCCGCCGCCACCCGGGAATTCCCTGGCGGCATGTTGAGCCTGGAAGTCCGCGCCGT
CAATCACCGTTACCTGGACGTGCAGATGCGCTTGCCGGAAGAGCTGCGCATCATCGAACCCCAGCTGCGCGAGCAGATCG
CCGCCCGCGTCACCCGCGGCAAGCTGGAATGCCGCGTCGGCCTCAACCAGGTGGACAGCGCCGCCCCCACGCTGGAAGTG
AACCAGGCCTTCCTCGCCCGCCTGCTGGAAGTCTCCCGCGACGTGCAAAAACAGTGCGGCGAAGGCAAGGGACTGTCGGT
CGGCGAACTGATGCGCTGGCCCGGCGTGCTGAAGAGCAACGAGCTGGCGCCGGAAGTGCTGCACCAGCTGTGCCTGGACG
CGCTGCAAACCGCGCTGGCCGACTTCAACGCCTCGCGCGGCCGCGAGGGCGAAAAGCTGAAGGCCGTGCTGATCGAGCGC
ATCGAGGCGATGGAAGCCATCGTCGCCGCGATCAAACCCAAGCTGCCGCAAATCCTGGAAAACTACATGGCCAAACTGTC
CGGCCGCCTGCAGGAGGCGCTGGGCAGCGTCGATGAAGACCGCTTGAAACAGGAATTCGCGCTGTTCGCGCAGAAGATAG
ACGTGGACGAGGAACTGTCGCGCCTGACCACCCACCTCTCAGAAGTGCGACGCATCCTGAAATCCGGCGGCCAATCCGGC
AAGCGCCTGGACTTCCTGATGCAGGAGCTGAACCGCGAAGCCAACACCCTGGGCTCCAAGTCGGTCTCCACCGACACCAC
CCAGGCCTCGGTGGAGCTGAAAGTGCTGATCGAGCAGATGCGCGAGCAAATTCAAAACATAGAGTAA

Upstream 100 bases:

>100_bases
GTCATCGGATGGCAGTTGTTATAGTGTTCACTGGCCCTGAATTGAGCTTAGCAAAGCAATTCGGGCCCAGCATTCGAAAA
TACCGATACAGGAGCTCCGC

Downstream 100 bases:

>100_bases
GCATTCACTACGTGTCACAACGTGTCAGCGAAACCACAAAAGCCCCGTCAACCGGGGCTTTCTTCATTTCATAACGTGTC
ACTACGTGTCAACAAAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MILSMTGFAAATREFPGGMLSLEVRAVNHRYLDVQMRLPEELRIIEPQLREQIAARVTRGKLECRVGLNQVDSAAPTLEV
NQAFLARLLEVSRDVQKQCGEGKGLSVGELMRWPGVLKSNELAPEVLHQLCLDALQTALADFNASRGREGEKLKAVLIER
IEAMEAIVAAIKPKLPQILENYMAKLSGRLQEALGSVDEDRLKQEFALFAQKIDVDEELSRLTTHLSEVRRILKSGGQSG
KRLDFLMQELNREANTLGSKSVSTDTTQASVELKVLIEQMREQIQNIE

Sequences:

>Translated_288_residues
MILSMTGFAAATREFPGGMLSLEVRAVNHRYLDVQMRLPEELRIIEPQLREQIAARVTRGKLECRVGLNQVDSAAPTLEV
NQAFLARLLEVSRDVQKQCGEGKGLSVGELMRWPGVLKSNELAPEVLHQLCLDALQTALADFNASRGREGEKLKAVLIER
IEAMEAIVAAIKPKLPQILENYMAKLSGRLQEALGSVDEDRLKQEFALFAQKIDVDEELSRLTTHLSEVRRILKSGGQSG
KRLDFLMQELNREANTLGSKSVSTDTTQASVELKVLIEQMREQIQNIE
>Mature_288_residues
MILSMTGFAAATREFPGGMLSLEVRAVNHRYLDVQMRLPEELRIIEPQLREQIAARVTRGKLECRVGLNQVDSAAPTLEV
NQAFLARLLEVSRDVQKQCGEGKGLSVGELMRWPGVLKSNELAPEVLHQLCLDALQTALADFNASRGREGEKLKAVLIER
IEAMEAIVAAIKPKLPQILENYMAKLSGRLQEALGSVDEDRLKQEFALFAQKIDVDEELSRLTTHLSEVRRILKSGGQSG
KRLDFLMQELNREANTLGSKSVSTDTTQASVELKVLIEQMREQIQNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=290, Percent_Identity=43.448275862069, Blast_Score=220, Evalue=7e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 32159; Mature: 32159

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSMTGFAAATREFPGGMLSLEVRAVNHRYLDVQMRLPEELRIIEPQLREQIAARVTRG
CEEECCHHHHHHHHCCCCEEEEEEEEECCEEEEEEECCCHHHHHCCHHHHHHHHHHHHHC
KLECRVGLNQVDSAAPTLEVNQAFLARLLEVSRDVQKQCGEGKGLSVGELMRWPGVLKSN
HHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
ELAPEVLHQLCLDALQTALADFNASRGREGEKLKAVLIERIEAMEAIVAAIKPKLPQILE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
NYMAKLSGRLQEALGSVDEDRLKQEFALFAQKIDVDEELSRLTTHLSEVRRILKSGGQSG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
KRLDFLMQELNREANTLGSKSVSTDTTQASVELKVLIEQMREQIQNIE
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MILSMTGFAAATREFPGGMLSLEVRAVNHRYLDVQMRLPEELRIIEPQLREQIAARVTRG
CEEECCHHHHHHHHCCCCEEEEEEEEECCEEEEEEECCCHHHHHCCHHHHHHHHHHHHHC
KLECRVGLNQVDSAAPTLEVNQAFLARLLEVSRDVQKQCGEGKGLSVGELMRWPGVLKSN
HHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
ELAPEVLHQLCLDALQTALADFNASRGREGEKLKAVLIERIEAMEAIVAAIKPKLPQILE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
NYMAKLSGRLQEALGSVDEDRLKQEFALFAQKIDVDEELSRLTTHLSEVRRILKSGGQSG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
KRLDFLMQELNREANTLGSKSVSTDTTQASVELKVLIEQMREQIQNIE
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]