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The map label for this gene is ydgD [H]

Identifier: 34499301

GI number: 34499301

Start: 4151196

End: 4152005

Strand: Direct

Name: ydgD [H]

Synonym: CV_3846

Alternate gene names: 34499301

Gene position: 4151196-4152005 (Clockwise)

Preceding gene: 34499299

Following gene: 34499305

Centisome position: 87.37

GC content: 67.78

Gene sequence:

>810_bases
ATGAAGCTGCCGCGCATTGCCCTCTGCCTCGCCCTGATCCCCGCCCTCGCCCAATCCGCTCCGCTGAGCAAAGAGCACAA
GATCCTGTTCTTCGGCAAGGACGACCGCGTGCTGGAAAAGCCCGAGCGCGCGCCCTGGCGCAGCGTGGGCCAGCTGGAAA
CCCGCTCCCGCACCATCTGCACCGGCACCCTGGTCGCCCCCGACGTGGTGCTGACCGCCGGCCATTGCTTCGTCGACGAG
AAGGGACGCTTCGATCCCGCCACCAGCTTCACCGTCGGCCTGTGGGGCGACGAATACACGGCGCTGAGCCGCATACAGGA
AGTGCAGGTGGACAAGGCCTTTCTCAAAGGCCTGATCCGAAAGCGCGACGGCCTGTACATCCCGCCGCGCATCGCGCCGC
GCGACTTCGCCTTCGTGCGGCTGGCCACGCCGCTGGGCAATAGCCAGGGCACGGTGCCGGTGTTCTCCGGCGACGCCCAG
GCGCTGAAAGCGCTGTTGGCCAAGCAGAATTGGACCCTCACCCAGGGCGGCTACCCGGTGGACGACCAGCGCCACCTGCG
CGCGCATCACGGCTGCAAGGCCACCGCGCTGCGCGAAGACGGCCGCCTGACCCACCGCTGCGACACGCTGGAAGGCAACA
GCGGCTCGCCGATCTTCGTCATCGACGCCAAGGGCCAGGCCACCATCGTCGCGGTGCAGAGTTCGGCGCCGCCGGCAGCG
CGCCGCAAGCTGGAAGACAATATGAGCGTGTCCGCGCCGGTGTTCCGGCAAGCGCTGCAGGCCTTCATCGCCAAATCCGC
CAAGAAATGA

Upstream 100 bases:

>100_bases
CTGCCAAGTAATTCCAGTGCCGACGCCGTCTGATCACTCAGCGGCTTAGCATTGCACGGGGCGCTTCGGCGCCCCGTTTC
CATTTCCAGGTGCCACCACG

Downstream 100 bases:

>100_bases
AAAAGCCGCCCCGAGGCGGCTTTTTTCTGTGCAACGGACTTCAAACCCTGGGCTTCATACGTTCAGCGCCTGCCGCTGAT
GCGCCAGCAATTCGGCAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MKLPRIALCLALIPALAQSAPLSKEHKILFFGKDDRVLEKPERAPWRSVGQLETRSRTICTGTLVAPDVVLTAGHCFVDE
KGRFDPATSFTVGLWGDEYTALSRIQEVQVDKAFLKGLIRKRDGLYIPPRIAPRDFAFVRLATPLGNSQGTVPVFSGDAQ
ALKALLAKQNWTLTQGGYPVDDQRHLRAHHGCKATALREDGRLTHRCDTLEGNSGSPIFVIDAKGQATIVAVQSSAPPAA
RRKLEDNMSVSAPVFRQALQAFIAKSAKK

Sequences:

>Translated_269_residues
MKLPRIALCLALIPALAQSAPLSKEHKILFFGKDDRVLEKPERAPWRSVGQLETRSRTICTGTLVAPDVVLTAGHCFVDE
KGRFDPATSFTVGLWGDEYTALSRIQEVQVDKAFLKGLIRKRDGLYIPPRIAPRDFAFVRLATPLGNSQGTVPVFSGDAQ
ALKALLAKQNWTLTQGGYPVDDQRHLRAHHGCKATALREDGRLTHRCDTLEGNSGSPIFVIDAKGQATIVAVQSSAPPAA
RRKLEDNMSVSAPVFRQALQAFIAKSAKK
>Mature_269_residues
MKLPRIALCLALIPALAQSAPLSKEHKILFFGKDDRVLEKPERAPWRSVGQLETRSRTICTGTLVAPDVVLTAGHCFVDE
KGRFDPATSFTVGLWGDEYTALSRIQEVQVDKAFLKGLIRKRDGLYIPPRIAPRDFAFVRLATPLGNSQGTVPVFSGDAQ
ALKALLAKQNWTLTQGGYPVDDQRHLRAHHGCKATALREDGRLTHRCDTLEGNSGSPIFVIDAKGQATIVAVQSSAPPAA
RRKLEDNMSVSAPVFRQALQAFIAKSAKK

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

Organism=Escherichia coli, GI1787882, Length=265, Percent_Identity=38.8679245283019, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR018114
- InterPro:   IPR001254
- InterPro:   IPR008256 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 29391; Mature: 29391

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00134 TRYPSIN_HIS ; PS50240 TRYPSIN_DOM ; PS00673 V8_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPRIALCLALIPALAQSAPLSKEHKILFFGKDDRVLEKPERAPWRSVGQLETRSRTIC
CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCCCCHHHCCHHHCCCEEE
TGTLVAPDVVLTAGHCFVDEKGRFDPATSFTVGLWGDEYTALSRIQEVQVDKAFLKGLIR
EECEECCCEEEECCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
KRDGLYIPPRIAPRDFAFVRLATPLGNSQGTVPVFSGDAQALKALLAKQNWTLTQGGYPV
HCCCCEECCCCCCCCEEEEEEECCCCCCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCC
DDQRHLRAHHGCKATALREDGRLTHRCDTLEGNSGSPIFVIDAKGQATIVAVQSSAPPAA
CCHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCHHH
RRKLEDNMSVSAPVFRQALQAFIAKSAKK
HHHHHCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLPRIALCLALIPALAQSAPLSKEHKILFFGKDDRVLEKPERAPWRSVGQLETRSRTIC
CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCCCCHHHCCHHHCCCEEE
TGTLVAPDVVLTAGHCFVDEKGRFDPATSFTVGLWGDEYTALSRIQEVQVDKAFLKGLIR
EECEECCCEEEECCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
KRDGLYIPPRIAPRDFAFVRLATPLGNSQGTVPVFSGDAQALKALLAKQNWTLTQGGYPV
HCCCCEECCCCCCCCEEEEEEECCCCCCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCC
DDQRHLRAHHGCKATALREDGRLTHRCDTLEGNSGSPIFVIDAKGQATIVAVQSSAPPAA
CCHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCHHH
RRKLEDNMSVSAPVFRQALQAFIAKSAKK
HHHHHCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]