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The map label for this gene is yacF [C]

Identifier: 34499279

GI number: 34499279

Start: 4122117

End: 4122875

Strand: Reverse

Name: yacF [C]

Synonym: CV_3824

Alternate gene names: 34499279

Gene position: 4122875-4122117 (Counterclockwise)

Preceding gene: 34499280

Following gene: 34499278

Centisome position: 86.78

GC content: 64.03

Gene sequence:

>759_bases
GTGATCAGTTTCGAATTTCCTGTCACCGAGCGCACCCGTATTCTGCTCCGTCTGGAGTATCTGTACGGGCGGCTGGCCTA
CTTCATCGGCAAGGATCATCCCCACGATCACCATGCCGCGCTGCAGGTGCTGTTCGAGTTGATGGAGACGGCGTCCCGCG
CCGACCTGAAAGCCGACCTGCTGCAGGAGCTGGAGCGGCAGAAGCAGATGCTGGAGGCCTTGCGCGACAATCCCAACGTC
GCGGAAGAAACGCTGGAAGGCGTGCTGGAGGAGATCGAGCGCGCGTCGTCGCAGCTGCTGGCGCTGACCGGCAAGTTCGG
CCAGAACCTGCGCGAGAACGAGTGGCTGATGGCGATCAAGCAGCGCGCCGGCATTCCGGGCGGCACCTGCCAGTTCGACC
TGCCGTCCTACCACCTGTGGCAGCAGCGCTCGGCCGAAGTGCGGCGCCAGGATCTGCGCCGCTGGGCCGCGCCGCTGATG
CCCACCGCCGACGCGGCCGAAATCCTGCTGCATCTGCTGCGCGACAGCGGCAAGACCTACCATTACGTGGCGCGCAAGGG
CGCGTTCCAGCAGATGTCCGGCGGCAAGGTGGTGCAGCTGATCCAGGTGGCTTACGACGACAATCTGGAACTGCTGCCCG
AATTGTCCGCCAACAAATACGCGCTCAACATCCGCTTCGTCAGCGCGGTGACCGGCGAGGCCCGGCCGCGGCAGACCGAA
CAGGATGTCGAATTCCAACTGACCAACTGCAAGTTTTGA

Upstream 100 bases:

>100_bases
GAGGCTTCAAGTTGATGCCAAACACAGTTATTATCTGGCAAATCTTGTCAAAGCAATGTTATAAGGCTTGCTGCAAGCCG
TGGAGAAGGGCAGATCTGCC

Downstream 100 bases:

>100_bases
GCATCATGTCCGAGTCCGTACGCATCGTCGCCTGCCCCACCTGCAAAGCCGAAGTGCGCTGGGAGCCGCAGAGCCGTTAT
CGCCCGTTCTGCAGCGAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MISFEFPVTERTRILLRLEYLYGRLAYFIGKDHPHDHHAALQVLFELMETASRADLKADLLQELERQKQMLEALRDNPNV
AEETLEGVLEEIERASSQLLALTGKFGQNLRENEWLMAIKQRAGIPGGTCQFDLPSYHLWQQRSAEVRRQDLRRWAAPLM
PTADAAEILLHLLRDSGKTYHYVARKGAFQQMSGGKVVQLIQVAYDDNLELLPELSANKYALNIRFVSAVTGEARPRQTE
QDVEFQLTNCKF

Sequences:

>Translated_252_residues
MISFEFPVTERTRILLRLEYLYGRLAYFIGKDHPHDHHAALQVLFELMETASRADLKADLLQELERQKQMLEALRDNPNV
AEETLEGVLEEIERASSQLLALTGKFGQNLRENEWLMAIKQRAGIPGGTCQFDLPSYHLWQQRSAEVRRQDLRRWAAPLM
PTADAAEILLHLLRDSGKTYHYVARKGAFQQMSGGKVVQLIQVAYDDNLELLPELSANKYALNIRFVSAVTGEARPRQTE
QDVEFQLTNCKF
>Mature_252_residues
MISFEFPVTERTRILLRLEYLYGRLAYFIGKDHPHDHHAALQVLFELMETASRADLKADLLQELERQKQMLEALRDNPNV
AEETLEGVLEEIERASSQLLALTGKFGQNLRENEWLMAIKQRAGIPGGTCQFDLPSYHLWQQRSAEVRRQDLRRWAAPLM
PTADAAEILLHLLRDSGKTYHYVARKGAFQQMSGGKVVQLIQVAYDDNLELLPELSANKYALNIRFVSAVTGEARPRQTE
QDVEFQLTNCKF

Specific function: Unknown

COG id: COG4582

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0289 family

Homologues:

Organism=Escherichia coli, GI1786291, Length=252, Percent_Identity=29.3650793650794, Blast_Score=119, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3824_CHRVO (P60012)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_903494.1
- ProteinModelPortal:   P60012
- SMR:   P60012
- GeneID:   2546937
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3824
- NMPDR:   fig|243365.1.peg.3824
- HOGENOM:   HBG432810
- OMA:   CYPTISG
- PhylomeDB:   P60012
- ProtClustDB:   PRK05287
- BioCyc:   CVIO243365:CV_3824-MONOMER
- HAMAP:   MF_01092
- InterPro:   IPR009777

Pfam domain/function: PF07072 DUF1342

EC number: NA

Molecular weight: Translated: 28940; Mature: 28940

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFEFPVTERTRILLRLEYLYGRLAYFIGKDHPHDHHAALQVLFELMETASRADLKADL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
LQELERQKQMLEALRDNPNVAEETLEGVLEEIERASSQLLALTGKFGQNLRENEWLMAIK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
QRAGIPGGTCQFDLPSYHLWQQRSAEVRRQDLRRWAAPLMPTADAAEILLHLLRDSGKTY
HHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEE
HYVARKGAFQQMSGGKVVQLIQVAYDDNLELLPELSANKYALNIRFVSAVTGEARPRQTE
EHHHHHCCHHHCCCCHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCC
QDVEFQLTNCKF
CCCEEEECCCCC
>Mature Secondary Structure
MISFEFPVTERTRILLRLEYLYGRLAYFIGKDHPHDHHAALQVLFELMETASRADLKADL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
LQELERQKQMLEALRDNPNVAEETLEGVLEEIERASSQLLALTGKFGQNLRENEWLMAIK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
QRAGIPGGTCQFDLPSYHLWQQRSAEVRRQDLRRWAAPLMPTADAAEILLHLLRDSGKTY
HHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEE
HYVARKGAFQQMSGGKVVQLIQVAYDDNLELLPELSANKYALNIRFVSAVTGEARPRQTE
EHHHHHCCHHHCCCCHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCC
QDVEFQLTNCKF
CCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782