BacMap

Definition	Chromobacterium violaceum ATCC 12472 chromosome, complete genome.
Accession	NC_005085
Length	4,751,080

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The map label for this gene is dgoT [H]

Identifier: 34498413

GI number: 34498413

Start: 3237831

End: 3239138

Strand: Direct

Name: dgoT [H]

Synonym: CV_2958

Alternate gene names: 34498413

Gene position: 3237831-3239138 (Clockwise)

Preceding gene: 34498412

Following gene: 34498422

Centisome position: 68.15

GC content: 67.2

Gene sequence:

>1308_bases
ATGCACGCCCCATCCCCGCAACACAACAAGATTCCCGCCCGTCGCTGGCGCATAGGCTGGCTGCTGGGCATCGGCATCCT
GGTCAATTACTTCGACCGCATCAGCCTGTCCGTGGCCGCGCCGCAGCTGCAGCAGGAGTTCGGCCTCAGCAACGGCGAGC
TGGGCCTGTTGTTCAGCGCCTTCTTCTGGAGCTATGCGCTGCTGCAGATCCCCACCGGCGTGATTCTGGACCGCTTCGGC
ACCACCCGCATCGGCCGGCTGGGCGCGCTGCTGTGGGGCGTGGCCGCCACGCTGACCGCCTGCGCCGGCGGCTTCGCCGG
CATTTTCGCCGCCCGCATGCTGCTGGGCGTGGCCGAGGCGCCAGGCTTCCCGGTCAGCTCCAAGGCCACCGGCTACTGGT
TTCCCCGCCGCGAGCGGGCGATGGCCACCGCCATCTTCGACGCCGCGGCCAAGTTCTCCAACGTGATCGGCGTGCCATTG
GTGGCGCTGGCCGTGGTCCACCTGGGCTGGCGCTGGGGCTTCGGCGTATCCGCCATCCTCAGCGTGCTGTATTTCATCGC
CTTCTACCTGATCTACCGCGATCCCAGCGCCGACACCAAGCTGAGCGAAGCCGAGCGCCAATACATCGTCCAGGGCGGCG
CGGCCGAGGAAGGCGTCAGCCAGCAGGGATCGATGGCCATGCTGGGCTACCTGCTGCGCCAACGCAAGGTGTGGGGCCTG
TCCATCGGCTTCGCCGCCTACGGCTACGTGTTCTACCTGTTCCTGACCTGGCTGCCCGGCTACCTGGTGCAGAGCATGCA
CATGGACATTCTCAAATCGGCATGGTTTTCCGCCATTCCGTGGATGTTCGCCACCCTGTCCGACCTGTTCGTCGGCGGCT
GGCTGATCGACAAGCTGATAGAACGCGGCTACGACGAGACCAAGGTGCGCAAGGCGGTGCTGCTGTGCGGGATGGCCATG
GGCATGGCGGTGTTCGGCGCCACCACCACCAGCGATCCCTACGTCGCCATCGTCTGGATCACCATCGCCCTCAGCGGCCT
GGCCGCCGCCGCGCCGGTGGGCTGGTCGCTGCCGTCTCTGATCGCGCCGCGCGGCGGCACCGGCACCGTCGGCGGCATCA
TGAACTTCGCCAACAACATGATGGGCGCGGTCGCCCCCATCGTCACCGGCTTCATCGTCGGCGCCACCCACTCCTTCGCC
AACGCCTTCCTGGTGGCGGGATTCATGCTGGTGATCGGCATCCTAGCCTTCGTGTTCCTGCTGGGCCGCATCGAGCCACT
GCCCGAGCCCGGCGTCTCCCCGGACTAG

Upstream 100 bases:

>100_bases
CGTCAGCCTGCCGCCCGAGGCGCTGTTGCCGCGCATCCTGGCCGAGCTGGGCTAGCCCCGAAGATTCAACGCAAAGGCAG
TAAGAAAGAGGAGAACAACA

Downstream 100 bases:

>100_bases
GCCGTCCCCGGCCCCGGCGCGAGCCGGGGCTTTTCACGCCATCCCGCCATCGCGCGGCGGCCCCGCCACCATGCGCACCA
GTCGTTCTATGGCCTCGTAC

Product: D-galactonate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MHAPSPQHNKIPARRWRIGWLLGIGILVNYFDRISLSVAAPQLQQEFGLSNGELGLLFSAFFWSYALLQIPTGVILDRFG
TTRIGRLGALLWGVAATLTACAGGFAGIFAARMLLGVAEAPGFPVSSKATGYWFPRRERAMATAIFDAAAKFSNVIGVPL
VALAVVHLGWRWGFGVSAILSVLYFIAFYLIYRDPSADTKLSEAERQYIVQGGAAEEGVSQQGSMAMLGYLLRQRKVWGL
SIGFAAYGYVFYLFLTWLPGYLVQSMHMDILKSAWFSAIPWMFATLSDLFVGGWLIDKLIERGYDETKVRKAVLLCGMAM
GMAVFGATTTSDPYVAIVWITIALSGLAAAAPVGWSLPSLIAPRGGTGTVGGIMNFANNMMGAVAPIVTGFIVGATHSFA
NAFLVAGFMLVIGILAFVFLLGRIEPLPEPGVSPD

Sequences:

>Translated_435_residues
MHAPSPQHNKIPARRWRIGWLLGIGILVNYFDRISLSVAAPQLQQEFGLSNGELGLLFSAFFWSYALLQIPTGVILDRFG
TTRIGRLGALLWGVAATLTACAGGFAGIFAARMLLGVAEAPGFPVSSKATGYWFPRRERAMATAIFDAAAKFSNVIGVPL
VALAVVHLGWRWGFGVSAILSVLYFIAFYLIYRDPSADTKLSEAERQYIVQGGAAEEGVSQQGSMAMLGYLLRQRKVWGL
SIGFAAYGYVFYLFLTWLPGYLVQSMHMDILKSAWFSAIPWMFATLSDLFVGGWLIDKLIERGYDETKVRKAVLLCGMAM
GMAVFGATTTSDPYVAIVWITIALSGLAAAAPVGWSLPSLIAPRGGTGTVGGIMNFANNMMGAVAPIVTGFIVGATHSFA
NAFLVAGFMLVIGILAFVFLLGRIEPLPEPGVSPD
>Mature_435_residues
MHAPSPQHNKIPARRWRIGWLLGIGILVNYFDRISLSVAAPQLQQEFGLSNGELGLLFSAFFWSYALLQIPTGVILDRFG
TTRIGRLGALLWGVAATLTACAGGFAGIFAARMLLGVAEAPGFPVSSKATGYWFPRRERAMATAIFDAAAKFSNVIGVPL
VALAVVHLGWRWGFGVSAILSVLYFIAFYLIYRDPSADTKLSEAERQYIVQGGAAEEGVSQQGSMAMLGYLLRQRKVWGL
SIGFAAYGYVFYLFLTWLPGYLVQSMHMDILKSAWFSAIPWMFATLSDLFVGGWLIDKLIERGYDETKVRKAVLLCGMAM
GMAVFGATTTSDPYVAIVWITIALSGLAAAAPVGWSLPSLIAPRGGTGTVGGIMNFANNMMGAVAPIVTGFIVGATHSFA
NAFLVAGFMLVIGILAFVFLLGRIEPLPEPGVSPD

Specific function: Intake Of Galactonate Into The Cell. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]

Homologues:

Organism=Homo sapiens, GI21322234, Length=449, Percent_Identity=24.9443207126949, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI9966811, Length=457, Percent_Identity=23.8512035010941, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI154350196, Length=397, Percent_Identity=24.9370277078086, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI6912666, Length=400, Percent_Identity=23.25, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI9945322, Length=448, Percent_Identity=24.1071428571429, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI223718438, Length=448, Percent_Identity=23.4375, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI148743791, Length=403, Percent_Identity=24.0694789081886, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI148728191, Length=326, Percent_Identity=24.5398773006135, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI5031955, Length=285, Percent_Identity=24.2105263157895, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI256219598, Length=428, Percent_Identity=24.0654205607477, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI4503847, Length=428, Percent_Identity=24.0654205607477, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI256219483, Length=428, Percent_Identity=24.0654205607477, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI4885441, Length=389, Percent_Identity=23.6503856041131, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI256219543, Length=337, Percent_Identity=24.9258160237389, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI87082320, Length=418, Percent_Identity=30.3827751196172, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI2367379, Length=414, Percent_Identity=32.3671497584541, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1789152, Length=452, Percent_Identity=31.4159292035398, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789515, Length=435, Percent_Identity=30.5747126436782, Blast_Score=194, Evalue=9e-51,
Organism=Escherichia coli, GI2367193, Length=418, Percent_Identity=29.4258373205742, Blast_Score=148, Evalue=9e-37,
Organism=Escherichia coli, GI87082071, Length=375, Percent_Identity=29.6, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788573, Length=439, Percent_Identity=23.9179954441913, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082310, Length=264, Percent_Identity=23.1060606060606, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17554148, Length=417, Percent_Identity=26.378896882494, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI193205400, Length=281, Percent_Identity=24.1992882562278, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17554962, Length=376, Percent_Identity=25.531914893617, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115533556, Length=344, Percent_Identity=25.2906976744186, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115533554, Length=344, Percent_Identity=25.2906976744186, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71997452, Length=439, Percent_Identity=23.4624145785877, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17535049, Length=435, Percent_Identity=22.2988505747126, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17552542, Length=474, Percent_Identity=24.0506329113924, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17560030, Length=253, Percent_Identity=23.3201581027668, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17566884, Length=352, Percent_Identity=24.1477272727273, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560966, Length=231, Percent_Identity=23.8095238095238, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71991453, Length=356, Percent_Identity=22.4719101123595, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71991448, Length=356, Percent_Identity=22.4719101123595, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI32565916, Length=258, Percent_Identity=20.1550387596899, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32565914, Length=258, Percent_Identity=20.1550387596899, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115534558, Length=286, Percent_Identity=24.8251748251748, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24641682, Length=407, Percent_Identity=28.009828009828, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24639764, Length=419, Percent_Identity=25.7756563245823, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28573299, Length=435, Percent_Identity=25.5172413793103, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24654215, Length=389, Percent_Identity=26.2210796915167, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI19922400, Length=389, Percent_Identity=26.2210796915167, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI20130135, Length=456, Percent_Identity=23.4649122807018, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24584153, Length=400, Percent_Identity=23.5, Blast_Score=99, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24655271, Length=442, Percent_Identity=23.7556561085973, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24583789, Length=430, Percent_Identity=25.1162790697674, Blast_Score=95, Evalue=7e-20,
Organism=Drosophila melanogaster, GI45550460, Length=439, Percent_Identity=25.9681093394077, Blast_Score=95, Evalue=9e-20,
Organism=Drosophila melanogaster, GI19920686, Length=427, Percent_Identity=24.5901639344262, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI20130167, Length=434, Percent_Identity=23.7327188940092, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24655255, Length=405, Percent_Identity=25.9259259259259, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24580790, Length=409, Percent_Identity=22.7383863080685, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24648416, Length=400, Percent_Identity=26.5, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21356189, Length=400, Percent_Identity=26.5, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24653727, Length=432, Percent_Identity=24.7685185185185, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28573708, Length=397, Percent_Identity=23.9294710327456, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28573707, Length=397, Percent_Identity=23.9294710327456, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24658658, Length=443, Percent_Identity=23.0248306997743, Blast_Score=85, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24658674, Length=403, Percent_Identity=23.8213399503722, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI45550364, Length=422, Percent_Identity=23.9336492890995, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45550495, Length=412, Percent_Identity=23.7864077669903, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI62484226, Length=446, Percent_Identity=23.0941704035874, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24658666, Length=442, Percent_Identity=22.6244343891403, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24651789, Length=398, Percent_Identity=22.6130653266332, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24651787, Length=398, Percent_Identity=22.6130653266332, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24658689, Length=436, Percent_Identity=21.7889908256881, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 46835; Mature: 46835

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAPSPQHNKIPARRWRIGWLLGIGILVNYFDRISLSVAAPQLQQEFGLSNGELGLLFSA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
FFWSYALLQIPTGVILDRFGTTRIGRLGALLWGVAATLTACAGGFAGIFAARMLLGVAEA
HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
PGFPVSSKATGYWFPRRERAMATAIFDAAAKFSNVIGVPLVALAVVHLGWRWGFGVSAIL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SVLYFIAFYLIYRDPSADTKLSEAERQYIVQGGAAEEGVSQQGSMAMLGYLLRQRKVWGL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHCE
SIGFAAYGYVFYLFLTWLPGYLVQSMHMDILKSAWFSAIPWMFATLSDLFVGGWLIDKLI
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERGYDETKVRKAVLLCGMAMGMAVFGATTTSDPYVAIVWITIALSGLAAAAPVGWSLPSL
HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHH
IAPRGGTGTVGGIMNFANNMMGAVAPIVTGFIVGATHSFANAFLVAGFMLVIGILAFVFL
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGRIEPLPEPGVSPD
HHCCCCCCCCCCCCC
>Mature Secondary Structure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HHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]