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The map label for this gene is des6 [H]

Identifier: 34497907

GI number: 34497907

Start: 2637230

End: 2638303

Strand: Direct

Name: des6 [H]

Synonym: CV_2452

Alternate gene names: 34497907

Gene position: 2637230-2638303 (Clockwise)

Preceding gene: 34497905

Following gene: 34497911

Centisome position: 55.51

GC content: 66.39

Gene sequence:

>1074_bases
ATGGGCAAACTGAGATTCCGCTCGTCGGCGCAGCTGCCGTTCCGGGTCGACCTGCAACGCGCCGCCCAAGACTATCTGGC
AGAGCGCGGCGACCATCGCTTCGCAGACTGGCGGGTGGGACTGAAGGGCGCGGCGCTGGCCGCCCTCAGCCTGGGCTGCT
ACGCGCTGGCGCTGAGCGCGACGACGATGTGGACGTTCGCGCCGGCCTATATCGCCGCCATCGTCCTGGCCATGCTGCTG
GCGATGAACAGCCTGCACGACGCCGCGCACGGCGCGCTGTTCCGCAGCGCCGCGCTCAACCGCCTGCTGACCCGCGCCGC
AAGCCTGCCGATGGGCATAGACGCCGATATCTGGACCCGGCGCCACGTGCATCTGCACCACACCTACCCCAATGTCGACG
GCTACGATCTGGACATCGAGCCCAATCCCTTCCTGAGGCAAACCCCATTCCAAAACTGGTCGCCGCAATTCCGCTTTCAG
CACCGTTACTGGCCGCTGGTGGCGGCGCTGTCCCTGCCCTATCTGTGCTGGTATGGCGACTGGTTGGACCTGCTGGGCAA
GAGCAAGCTCAGACAATACGACAGCCAGCCAATTCCCGCGGCGGGATTCCTGCTGGGCAAGCTGGGACACTTGGTCCTGC
TGCTGGCGTTGCCCTGGTACTGCCTGCCGGCCGGCACGATCAGCTGGGGGGGGCTGCTGCTGTGCTACCTGGCCGGCCTG
ATGACGGCTTCCTGCTTCCTGGTGGCGATGATTCTGGGCACGCACTGGGCGGAAGTGGAGTTTTTCCGGCCCGAGGGCAT
GGAAATGCCGCACACCTGGCACGAGCACCAGTTCCTGACCTGCTGCGACTGGCTACCCAGGCCGCAGGCGCTGGGGCATT
TGCTGGGCGGGCTGCATCTGCATCTCACCCATCATCTGTTCCCCGCTTACAGCCATCGCCACTATCCGGCGCTGGCGCGC
ATCGTTGAGGAGCTGGCATGCCGGCACGGCCTGCCCTACCGCCGCATCGGCTACCAGGGCCTCTGGCGCGCGCAGCAAAA
CTTCCTGCGGGCCATGGGGCGACGGCCGGATTGA

Upstream 100 bases:

>100_bases
TGTGCGCAGGCCTGTTCGGCATCCGCGACGGCTGGGCGCTGTGCCTGCTGGCGCTGCTGCTGGTCCACGGTCTGGCCGGA
CTTCGCCTGCGGGAGGCCGC

Downstream 100 bases:

>100_bases
ATCGAGGCCTGCAAAAACCAACGCCCGCGGCGCATCGCGGGCGTTTTGTCTTCCGTCGCGGCTAAATCTTATGCCGCCAA
GCGAACAGCTTGGAGAGAAT

Product: linoleoyl-CoA desaturase

Products: NA

Alternate protein names: Delta(6)-desaturase [H]

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MGKLRFRSSAQLPFRVDLQRAAQDYLAERGDHRFADWRVGLKGAALAALSLGCYALALSATTMWTFAPAYIAAIVLAMLL
AMNSLHDAAHGALFRSAALNRLLTRAASLPMGIDADIWTRRHVHLHHTYPNVDGYDLDIEPNPFLRQTPFQNWSPQFRFQ
HRYWPLVAALSLPYLCWYGDWLDLLGKSKLRQYDSQPIPAAGFLLGKLGHLVLLLALPWYCLPAGTISWGGLLLCYLAGL
MTASCFLVAMILGTHWAEVEFFRPEGMEMPHTWHEHQFLTCCDWLPRPQALGHLLGGLHLHLTHHLFPAYSHRHYPALAR
IVEELACRHGLPYRRIGYQGLWRAQQNFLRAMGRRPD

Sequences:

>Translated_357_residues
MGKLRFRSSAQLPFRVDLQRAAQDYLAERGDHRFADWRVGLKGAALAALSLGCYALALSATTMWTFAPAYIAAIVLAMLL
AMNSLHDAAHGALFRSAALNRLLTRAASLPMGIDADIWTRRHVHLHHTYPNVDGYDLDIEPNPFLRQTPFQNWSPQFRFQ
HRYWPLVAALSLPYLCWYGDWLDLLGKSKLRQYDSQPIPAAGFLLGKLGHLVLLLALPWYCLPAGTISWGGLLLCYLAGL
MTASCFLVAMILGTHWAEVEFFRPEGMEMPHTWHEHQFLTCCDWLPRPQALGHLLGGLHLHLTHHLFPAYSHRHYPALAR
IVEELACRHGLPYRRIGYQGLWRAQQNFLRAMGRRPD
>Mature_356_residues
GKLRFRSSAQLPFRVDLQRAAQDYLAERGDHRFADWRVGLKGAALAALSLGCYALALSATTMWTFAPAYIAAIVLAMLLA
MNSLHDAAHGALFRSAALNRLLTRAASLPMGIDADIWTRRHVHLHHTYPNVDGYDLDIEPNPFLRQTPFQNWSPQFRFQH
RYWPLVAALSLPYLCWYGDWLDLLGKSKLRQYDSQPIPAAGFLLGKLGHLVLLLALPWYCLPAGTISWGGLLLCYLAGLM
TASCFLVAMILGTHWAEVEFFRPEGMEMPHTWHEHQFLTCCDWLPRPQALGHLLGGLHLHLTHHLFPAYSHRHYPALARI
VEELACRHGLPYRRIGYQGLWRAQQNFLRAMGRRPD

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: =1.14.19.3 [H]

Molecular weight: Translated: 40606; Mature: 40475

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLRFRSSAQLPFRVDLQRAAQDYLAERGDHRFADWRVGLKGAALAALSLGCYALALSA
CCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHH
TTMWTFAPAYIAAIVLAMLLAMNSLHDAAHGALFRSAALNRLLTRAASLPMGIDADIWTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCC
RHVHLHHTYPNVDGYDLDIEPNPFLRQTPFQNWSPQFRFQHRYWPLVAALSLPYLCWYGD
CEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCHHHHHHH
WLDLLGKSKLRQYDSQPIPAAGFLLGKLGHLVLLLALPWYCLPAGTISWGGLLLCYLAGL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
MTASCFLVAMILGTHWAEVEFFRPEGMEMPHTWHEHQFLTCCDWLPRPQALGHLLGGLHL
HHHHHHHHHHHHCCCHHEEEEECCCCCCCCCCHHHCHHHHHHHCCCCHHHHHHHHCCHHH
HLTHHLFPAYSHRHYPALARIVEELACRHGLPYRRIGYQGLWRAQQNFLRAMGRRPD
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GKLRFRSSAQLPFRVDLQRAAQDYLAERGDHRFADWRVGLKGAALAALSLGCYALALSA
CCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHH
TTMWTFAPAYIAAIVLAMLLAMNSLHDAAHGALFRSAALNRLLTRAASLPMGIDADIWTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCC
RHVHLHHTYPNVDGYDLDIEPNPFLRQTPFQNWSPQFRFQHRYWPLVAALSLPYLCWYGD
CEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCHHHHHHH
WLDLLGKSKLRQYDSQPIPAAGFLLGKLGHLVLLLALPWYCLPAGTISWGGLLLCYLAGL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
MTASCFLVAMILGTHWAEVEFFRPEGMEMPHTWHEHQFLTCCDWLPRPQALGHLLGGLHL
HHHHHHHHHHHHCCCHHEEEEECCCCCCCCCCHHHCHHHHHHHCCCCHHHHHHHHCCHHH
HLTHHLFPAYSHRHYPALARIVEELACRHGLPYRRIGYQGLWRAQQNFLRAMGRRPD
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8389613; 8905231 [H]