| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is yegD [H]
Identifier: 34497850
GI number: 34497850
Start: 2577746
End: 2579011
Strand: Reverse
Name: yegD [H]
Synonym: CV_2395
Alternate gene names: 34497850
Gene position: 2579011-2577746 (Counterclockwise)
Preceding gene: 34497851
Following gene: 34497841
Centisome position: 54.28
GC content: 66.51
Gene sequence:
>1266_bases GTGACTGATCAAACTGCCGCCCGCGCCTGCGGCATAGACTTCGGCACCTCCAACTCCACCGTGGGCTGGCTGCGGCCCGG CCATGACACCCTGTTGCAGCTGGAAGACGGCAAGATCACGCTGCCCTCGGTGGTGTTCTTCAACTACGAGGAAGACCACT CCCGCTTCGGCCGCGCCGCGCTGGCCGAATACATAGACGGCTTCGAGGGCCGGCTGATGCGCTCGCTGAAGAGCCTGCTG GGCTCCAGCCTGATCGACAGCCAGACCGAGGTCCAGGGCAAGGCGCTGCCGTTCCGCCACCTGCTGAAGCTGTTCATCCA GGAATTGAAGCTGCGCGCCGAAGGCGCCGCCGGCCGCGAATTCGAGCAAGTGGTGCTGGGACGCCCGGTCTACTTCGTCG ACGACAACCCACAGGCCGACAAGCTGGCCCAGGACACGCTGGCCGACATCGCCCGCCAGGTAGGCTTCAAGGAGATTTCC TTCCAGCTGGAGCCGATCGCCGCGGCGTTCGACTACGAATCCAACATCCAGAAGGAAGAGCTGGTGCTGATCGTCGACAT CGGCGGCGGCACCTCGGACTTCACGCTGATCCGCCTGTCGCCGGAGCGCCGCAGCCATGCCGAGCGCCGCGACGACATCC TGGCCACCGGCGGCGTGCACATCGGCGGCACCGATTTCGACCGCCAGCTGAGCCTGCACGGCGTGATGCCCTTGTTCGGC TTCAAGACCCGGCTGCGCAACAACGCCGAGATGCCGTCCAGCCAGTACTTCAACTTGGCCACCTGGCACACCATCAACTT CGCCTACACCCGCAAGGCCTGGATGGACCTGCAGGACGTGCACCGCGACGCCGCCGAGCCGGAAAAGCTGGACCGCCTGT TCAAGCTGATCCAGGAGCGCGCCGGGCACTGGCTGGCGATGGAAGTGGAAGCCGCCAAGATCGCGCTGTCCGACCGGGAC AGCCACCGCCTGGCGCTGGACGCCATCGAGCGCGGTCTGCACTGCGACCTGAGCCGCGCCGATTTCGAGACCAGCATCAG CGCGCTGCTGGACCGCGTCGGCGGCACCGTCGGCAAGCTGCTGGCCGATTCCGGCCTCAAGGCCCAGGATGTCGACACCG TGTTTTTCACCGGCGGCTCCAGCGGCGTGCCGGCGCTGCGCGACGGCATCCGAGCCTTGCTGCCCAATGCCCGCCACGTG GAAGGCAATCTGTTCGGCAGCATCGGCAGCGGCCTGGCCATCGAGGCGAAAAAGCGCTACGGCTGA
Upstream 100 bases:
>100_bases GCCTGCACAAGCTGAAGCGCGATTCCTGAGCGTTTCGCCCTTCCCTTTCCGCGCCATTCCGCGTACCATCGCGCCTCTTT TATTTTCAAGGAGATGCTAA
Downstream 100 bases:
>100_bases GCCTGCCAGGCTTGCAATGAAAAACGCCGCGAATCATCGCGGCGTTTTTTTATGGAGACAGCCGTTCAGAAATCCCGCTG CGGCACCAGCACCGTGCGGT
Product: heat-shock protein Hsp 70
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 421; Mature: 420
Protein sequence:
>421_residues MTDQTAARACGIDFGTSNSTVGWLRPGHDTLLQLEDGKITLPSVVFFNYEEDHSRFGRAALAEYIDGFEGRLMRSLKSLL GSSLIDSQTEVQGKALPFRHLLKLFIQELKLRAEGAAGREFEQVVLGRPVYFVDDNPQADKLAQDTLADIARQVGFKEIS FQLEPIAAAFDYESNIQKEELVLIVDIGGGTSDFTLIRLSPERRSHAERRDDILATGGVHIGGTDFDRQLSLHGVMPLFG FKTRLRNNAEMPSSQYFNLATWHTINFAYTRKAWMDLQDVHRDAAEPEKLDRLFKLIQERAGHWLAMEVEAAKIALSDRD SHRLALDAIERGLHCDLSRADFETSISALLDRVGGTVGKLLADSGLKAQDVDTVFFTGGSSGVPALRDGIRALLPNARHV EGNLFGSIGSGLAIEAKKRYG
Sequences:
>Translated_421_residues MTDQTAARACGIDFGTSNSTVGWLRPGHDTLLQLEDGKITLPSVVFFNYEEDHSRFGRAALAEYIDGFEGRLMRSLKSLL GSSLIDSQTEVQGKALPFRHLLKLFIQELKLRAEGAAGREFEQVVLGRPVYFVDDNPQADKLAQDTLADIARQVGFKEIS FQLEPIAAAFDYESNIQKEELVLIVDIGGGTSDFTLIRLSPERRSHAERRDDILATGGVHIGGTDFDRQLSLHGVMPLFG FKTRLRNNAEMPSSQYFNLATWHTINFAYTRKAWMDLQDVHRDAAEPEKLDRLFKLIQERAGHWLAMEVEAAKIALSDRD SHRLALDAIERGLHCDLSRADFETSISALLDRVGGTVGKLLADSGLKAQDVDTVFFTGGSSGVPALRDGIRALLPNARHV EGNLFGSIGSGLAIEAKKRYG >Mature_420_residues TDQTAARACGIDFGTSNSTVGWLRPGHDTLLQLEDGKITLPSVVFFNYEEDHSRFGRAALAEYIDGFEGRLMRSLKSLLG SSLIDSQTEVQGKALPFRHLLKLFIQELKLRAEGAAGREFEQVVLGRPVYFVDDNPQADKLAQDTLADIARQVGFKEISF QLEPIAAAFDYESNIQKEELVLIVDIGGGTSDFTLIRLSPERRSHAERRDDILATGGVHIGGTDFDRQLSLHGVMPLFGF KTRLRNNAEMPSSQYFNLATWHTINFAYTRKAWMDLQDVHRDAAEPEKLDRLFKLIQERAGHWLAMEVEAAKIALSDRDS HRLALDAIERGLHCDLSRADFETSISALLDRVGGTVGKLLADSGLKAQDVDTVFFTGGSSGVPALRDGIRALLPNARHVE GNLFGSIGSGLAIEAKKRYG
Specific function: Unknown
COG id: COG0443
COG function: function code O; Molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heat shock protein 70 family [H]
Homologues:
Organism=Homo sapiens, GI16507237, Length=438, Percent_Identity=25.1141552511416, Blast_Score=93, Evalue=4e-19, Organism=Homo sapiens, GI34419635, Length=414, Percent_Identity=25.3623188405797, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI24234688, Length=431, Percent_Identity=23.8979118329466, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI48928056, Length=456, Percent_Identity=23.2456140350877, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI124256496, Length=412, Percent_Identity=24.0291262135922, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI24234686, Length=410, Percent_Identity=23.4146341463415, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI5729877, Length=410, Percent_Identity=22.9268292682927, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI13676857, Length=412, Percent_Identity=23.5436893203883, Blast_Score=71, Evalue=2e-12, Organism=Escherichia coli, GI87082035, Length=447, Percent_Identity=30.6487695749441, Blast_Score=191, Evalue=8e-50, Organism=Escherichia coli, GI1788875, Length=402, Percent_Identity=28.8557213930348, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1786196, Length=412, Percent_Identity=22.3300970873786, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1786870, Length=384, Percent_Identity=23.4375, Blast_Score=72, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17534015, Length=416, Percent_Identity=26.2019230769231, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17534013, Length=416, Percent_Identity=26.2019230769231, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17568549, Length=410, Percent_Identity=25.609756097561, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17507981, Length=412, Percent_Identity=24.2718446601942, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17534771, Length=436, Percent_Identity=24.7706422018349, Blast_Score=83, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6322426, Length=436, Percent_Identity=25.9174311926606, Blast_Score=93, Evalue=9e-20, Organism=Saccharomyces cerevisiae, GI6322505, Length=410, Percent_Identity=23.9024390243902, Blast_Score=90, Evalue=7e-19, Organism=Saccharomyces cerevisiae, GI6319396, Length=414, Percent_Identity=24.8792270531401, Blast_Score=85, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6320950, Length=417, Percent_Identity=24.9400479616307, Blast_Score=85, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323401, Length=452, Percent_Identity=21.2389380530973, Blast_Score=85, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6320805, Length=433, Percent_Identity=23.094688221709, Blast_Score=85, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6319314, Length=415, Percent_Identity=24.0963855421687, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6319972, Length=406, Percent_Identity=24.6305418719212, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6323004, Length=411, Percent_Identity=23.8442822384428, Blast_Score=78, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6324120, Length=406, Percent_Identity=24.384236453202, Blast_Score=78, Evalue=3e-15, Organism=Drosophila melanogaster, GI17738165, Length=414, Percent_Identity=25.3623188405797, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24647034, Length=450, Percent_Identity=23.1111111111111, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24647038, Length=450, Percent_Identity=23.1111111111111, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24647036, Length=450, Percent_Identity=23.1111111111111, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI17737967, Length=450, Percent_Identity=23.1111111111111, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI28571721, Length=450, Percent_Identity=23.1111111111111, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI28571719, Length=450, Percent_Identity=23.1111111111111, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24641406, Length=437, Percent_Identity=23.3409610983982, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641408, Length=437, Percent_Identity=23.3409610983982, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641402, Length=437, Percent_Identity=23.3409610983982, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641404, Length=437, Percent_Identity=23.3409610983982, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI17737941, Length=410, Percent_Identity=24.8780487804878, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI17647515, Length=408, Percent_Identity=23.5294117647059, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018181 - InterPro: IPR001023 - InterPro: IPR013126 [H]
Pfam domain/function: PF00012 HSP70 [H]
EC number: NA
Molecular weight: Translated: 46545; Mature: 46414
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: PS00329 HSP70_2 ; PS01036 HSP70_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQTAARACGIDFGTSNSTVGWLRPGHDTLLQLEDGKITLPSVVFFNYEEDHSRFGRAA CCCCHHHHHCCCCCCCCCCEEEEECCCCCCEEEECCCCEEECEEEEEECCHHHHHHHHHH LAEYIDGFEGRLMRSLKSLLGSSLIDSQTEVQGKALPFRHLLKLFIQELKLRAEGAAGRE HHHHHCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH FEQVVLGRPVYFVDDNPQADKLAQDTLADIARQVGFKEISFQLEPIAAAFDYESNIQKEE HHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCHHEEEEECCHHEEECCCCCCCCCE LVLIVDIGGGTSDFTLIRLSPERRSHAERRDDILATGGVHIGGTDFDRQLSLHGVMPLFG EEEEEECCCCCCCEEEEEECCHHHHHHHHHCCEEEECCEEECCCCCCCEEEHHCCHHHHH FKTRLRNNAEMPSSQYFNLATWHTINFAYTRKAWMDLQDVHRDAAEPEKLDRLFKLIQER HHHHHCCCCCCCCCCCEEEEEEEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH AGHWLAMEVEAAKIALSDRDSHRLALDAIERGLHCDLSRADFETSISALLDRVGGTVGKL CCCEEEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH LADSGLKAQDVDTVFFTGGSSGVPALRDGIRALLPNARHVEGNLFGSIGSGLAIEAKKRY HHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCEEECCCCCEEEEECCCC G C >Mature Secondary Structure TDQTAARACGIDFGTSNSTVGWLRPGHDTLLQLEDGKITLPSVVFFNYEEDHSRFGRAA CCCHHHHHCCCCCCCCCCEEEEECCCCCCEEEECCCCEEECEEEEEECCHHHHHHHHHH LAEYIDGFEGRLMRSLKSLLGSSLIDSQTEVQGKALPFRHLLKLFIQELKLRAEGAAGRE HHHHHCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH FEQVVLGRPVYFVDDNPQADKLAQDTLADIARQVGFKEISFQLEPIAAAFDYESNIQKEE HHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCHHEEEEECCHHEEECCCCCCCCCE LVLIVDIGGGTSDFTLIRLSPERRSHAERRDDILATGGVHIGGTDFDRQLSLHGVMPLFG EEEEEECCCCCCCEEEEEECCHHHHHHHHHCCEEEECCEEECCCCCCCEEEHHCCHHHHH FKTRLRNNAEMPSSQYFNLATWHTINFAYTRKAWMDLQDVHRDAAEPEKLDRLFKLIQER HHHHHCCCCCCCCCCCEEEEEEEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH AGHWLAMEVEAAKIALSDRDSHRLALDAIERGLHCDLSRADFETSISALLDRVGGTVGKL CCCEEEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH LADSGLKAQDVDTVFFTGGSSGVPALRDGIRALLPNARHVEGNLFGSIGSGLAIEAKKRY HHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCEEECCCCCEEEEECCCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 6094528; 7940673; 7984428 [H]