Definition Chromobacterium violaceum ATCC 12472 chromosome, complete genome.
Accession NC_005085
Length 4,751,080

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The map label for this gene is ykvO [H]

Identifier: 34497632

GI number: 34497632

Start: 2349466

End: 2350218

Strand: Direct

Name: ykvO [H]

Synonym: CV_2177

Alternate gene names: 34497632

Gene position: 2349466-2350218 (Clockwise)

Preceding gene: 34497625

Following gene: 34497633

Centisome position: 49.45

GC content: 68.26

Gene sequence:

>753_bases
ATGCGGCGGCTTGAAGGCAAACAGGCTTTGATCACCGGCGGCACCAGCGGCATAGGGCTGGAAACCGCCAAGCAGTTCCT
GGCCGAGGGCGCAAAAGTGGCAATCACTGGGCGCAGCGAGGCGGGCCTCGCGCAGGCGAACGAGGTTTTGGGCGGCCGCG
CGTTGCTGCTGAAGAGCGACGCAGGCAGCCTGGACGACCAGCGCGCGCTGCCGGCGCAGCTGCGCAGCCACGGTTGGAGC
CGGCTGGACGCGGCATACCTGAATGCCGGCGATGTCACCCATCTGCCGCTGGCGGATTGGAGCGAGGCGGACTTCGACCG
GGTGATGGCTGTCAATCTGAAAGGCCCGTTCTTCCTGCTGCAGGCCTTGTCGCCGCTGCTGGCCAACCCCAGTTCCGTGA
TTCTGTGCGGCTCGGTCGGCGCCAGGATAGGCGTTCCGTCCAGCAGCGCCTACGCGGCCAGCAAGGCCGGCCTGCTGTCG
CTGGCGCGCACGCTGTCGGCCGAGTGGCTGGATCGCGGCATCCGCGTCAACGGCCTGTCGCCGGGACCGACGCACACCCC
GGCTTTCGGCAAGCTGGGCATGCCGGAAGACGAATTGCCGGCGCTGCGGGACCGGATTCGCAAGCTGGTGCCGCTGGGCA
GGCTGGGACGGCCGGAGGAGTTGGCGAAGGCGGCGGTGTTCCTGGCTTCGGACGAGTCCAGCTACATGCTGGGCAGCGAG
CTATTGGTCGATGGCGGCGTCGGCAACGTGTGA

Upstream 100 bases:

>100_bases
CAGTCATGATCGTTCATTAGTATCAATTTGGTACCTACTATACATTACATACCACTGGCCATAAAGTAGCCGCTTCGATA
GTCAATCCAAGGAGAACGAC

Downstream 100 bases:

>100_bases
ATTGTTTATGACGTTTGTGTTTCGCGGCGCTAGAATGGTCCGCATTGAAATGGAAGCGTCATCCGATGAATGATCCGAAA
TCCGCCGTTCTGCGCGCCGA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MRRLEGKQALITGGTSGIGLETAKQFLAEGAKVAITGRSEAGLAQANEVLGGRALLLKSDAGSLDDQRALPAQLRSHGWS
RLDAAYLNAGDVTHLPLADWSEADFDRVMAVNLKGPFFLLQALSPLLANPSSVILCGSVGARIGVPSSSAYAASKAGLLS
LARTLSAEWLDRGIRVNGLSPGPTHTPAFGKLGMPEDELPALRDRIRKLVPLGRLGRPEELAKAAVFLASDESSYMLGSE
LLVDGGVGNV

Sequences:

>Translated_250_residues
MRRLEGKQALITGGTSGIGLETAKQFLAEGAKVAITGRSEAGLAQANEVLGGRALLLKSDAGSLDDQRALPAQLRSHGWS
RLDAAYLNAGDVTHLPLADWSEADFDRVMAVNLKGPFFLLQALSPLLANPSSVILCGSVGARIGVPSSSAYAASKAGLLS
LARTLSAEWLDRGIRVNGLSPGPTHTPAFGKLGMPEDELPALRDRIRKLVPLGRLGRPEELAKAAVFLASDESSYMLGSE
LLVDGGVGNV
>Mature_250_residues
MRRLEGKQALITGGTSGIGLETAKQFLAEGAKVAITGRSEAGLAQANEVLGGRALLLKSDAGSLDDQRALPAQLRSHGWS
RLDAAYLNAGDVTHLPLADWSEADFDRVMAVNLKGPFFLLQALSPLLANPSSVILCGSVGARIGVPSSSAYAASKAGLLS
LARTLSAEWLDRGIRVNGLSPGPTHTPAFGKLGMPEDELPALRDRIRKLVPLGRLGRPEELAKAAVFLASDESSYMLGSE
LLVDGGVGNV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=32.8185328185328, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=32.4110671936759, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=30.4, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=32, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=29.5275590551181, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=33.7662337662338, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=30.4526748971193, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=26.4591439688716, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI10190704, Length=261, Percent_Identity=32.183908045977, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=33.5078534031414, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=28.0487804878049, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI20149619, Length=199, Percent_Identity=32.6633165829146, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=28.6259541984733, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.0546448087432, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4503301, Length=117, Percent_Identity=37.6068376068376, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=34.4, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=32.6771653543307, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=34.136546184739, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI2367365, Length=254, Percent_Identity=31.496062992126, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=31.8725099601594, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.9838056680162, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=33.7349397590361, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=34.2307692307692, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=30.2040816326531, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=30.241935483871, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=27.8884462151394, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787526, Length=216, Percent_Identity=32.8703703703704, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=27.6264591439689, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=32.8, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=31.1284046692607, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=32.6996197718631, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=31.4393939393939, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=29.1187739463602, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=30.5882352941176, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=31.0861423220974, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=29.811320754717, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=32.1969696969697, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=30.4182509505703, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=30.8270676691729, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=29.6577946768061, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=30.2238805970149, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=30.6818181818182, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=29.368029739777, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=29.6577946768061, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=29.5454545454545, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=30.0395256916996, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=29.8850574712644, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=28.4584980237154, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=28.957528957529, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=27.5303643724696, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=28.1746031746032, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=28.5171102661597, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=121, Percent_Identity=38.8429752066116, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=260, Percent_Identity=28.4615384615385, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=28, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=27.9527559055118, Blast_Score=75, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=196, Percent_Identity=27.5510204081633, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=34.0080971659919, Blast_Score=114, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=32.8, Blast_Score=110, Evalue=6e-25,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=31.0483870967742, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=31.3492063492063, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=30.1587301587302, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=30.4347826086957, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=29.6442687747036, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24644337, Length=247, Percent_Identity=31.1740890688259, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=28.2352941176471, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26119; Mature: 26119

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MRRLEGKQALITGGTSGIGLETAKQFLAEGAKVAITGRSEAGLAQANEVLGGRALLLKSD
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCEEEEEECC
AGSLDDQRALPAQLRSHGWSRLDAAYLNAGDVTHLPLADWSEADFDRVMAVNLKGPFFLL
CCCCCCHHCCHHHHHHCCCHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEEECCCHHHHH
QALSPLLANPSSVILCGSVGARIGVPSSSAYAASKAGLLSLARTLSAEWLDRGIRVNGLS
HHHHHHHCCCCCEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCC
PGPTHTPAFGKLGMPEDELPALRDRIRKLVPLGRLGRPEELAKAAVFLASDESSYMLGSE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCCEEECCE
LLVDGGVGNV
EEECCCCCCC
>Mature Secondary Structure
MRRLEGKQALITGGTSGIGLETAKQFLAEGAKVAITGRSEAGLAQANEVLGGRALLLKSD
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCEEEEEECC
AGSLDDQRALPAQLRSHGWSRLDAAYLNAGDVTHLPLADWSEADFDRVMAVNLKGPFFLL
CCCCCCHHCCHHHHHHCCCHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEEECCCHHHHH
QALSPLLANPSSVILCGSVGARIGVPSSSAYAASKAGLLSLARTLSAEWLDRGIRVNGLS
HHHHHHHCCCCCEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCC
PGPTHTPAFGKLGMPEDELPALRDRIRKLVPLGRLGRPEELAKAAVFLASDESSYMLGSE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCCEEECCE
LLVDGGVGNV
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]