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The map label for this gene is exbD1 [H]

Identifier: 34497440

GI number: 34497440

Start: 2163330

End: 2163773

Strand: Direct

Name: exbD1 [H]

Synonym: CV_1985

Alternate gene names: 34497440

Gene position: 2163330-2163773 (Clockwise)

Preceding gene: 34497439

Following gene: 34497441

Centisome position: 45.53

GC content: 64.86

Gene sequence:

>444_bases
ATGGCCCGTTACACGCGATTTGGCCACGGCAAGGGCGACGAGGACCAGGTGCTGTCTGCGATCAACACCACGCCGCTGGT
GGACGTGATGCTGGTGCTGCTGATCATCTTTCTGATCACGGTGCCGGTGGTGACGCAAACGGTGAAGATGACGCTGCCGA
AAGAACAGAACATCCCGACGCAGACCAAGCCGGAGAACGTGGTGCTGGGGGTGGGGCCGGACAGCCGCATCTACTGGAAC
ATGTCGCCGGTGAAGGATCAGCAGGAATTGCTGGCGCGGCTGGTGAAGGAAGCGAAGAAGGATCCGCAGCCGGAAGTGCA
CATCCGGGGCGACGCGACGGCGCGGTACGCGCCGATCGGCCGCATCGTGCTGGCGGTGCAGCAGGCGGGGATCGTGAAGA
TCGCGTTCATCACGGAGCCGCCGGCGCCCGGCGGCGGGGAGTAG

Upstream 100 bases:

>100_bases
CTGGCTGGTGCGGCGCAACAAGCTGGTGCTGGACAACGTGCGCGTGGTGTCGGGCCGTCTGCACGCCAGCCTGCTGAACA
ACCCGAGCCGGTAATCGAAG

Downstream 100 bases:

>100_bases
GAGAAGAGACATGGCGATGAATGTGGGGTCGTCGGGAGAAGACGACCTGATGATGGAGATCAACACCACGCCGCTGATCG
ACGTGATGTTGGTGATGCTG

Product: biopolymer transport exbD transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MARYTRFGHGKGDEDQVLSAINTTPLVDVMLVLLIIFLITVPVVTQTVKMTLPKEQNIPTQTKPENVVLGVGPDSRIYWN
MSPVKDQQELLARLVKEAKKDPQPEVHIRGDATARYAPIGRIVLAVQQAGIVKIAFITEPPAPGGGE

Sequences:

>Translated_147_residues
MARYTRFGHGKGDEDQVLSAINTTPLVDVMLVLLIIFLITVPVVTQTVKMTLPKEQNIPTQTKPENVVLGVGPDSRIYWN
MSPVKDQQELLARLVKEAKKDPQPEVHIRGDATARYAPIGRIVLAVQQAGIVKIAFITEPPAPGGGE
>Mature_146_residues
ARYTRFGHGKGDEDQVLSAINTTPLVDVMLVLLIIFLITVPVVTQTVKMTLPKEQNIPTQTKPENVVLGVGPDSRIYWNM
SPVKDQQELLARLVKEAKKDPQPEVHIRGDATARYAPIGRIVLAVQQAGIVKIAFITEPPAPGGGE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=132, Percent_Identity=36.3636363636364, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16076; Mature: 15945

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARYTRFGHGKGDEDQVLSAINTTPLVDVMLVLLIIFLITVPVVTQTVKMTLPKEQNIPT
CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
QTKPENVVLGVGPDSRIYWNMSPVKDQQELLARLVKEAKKDPQPEVHIRGDATARYAPIG
CCCCCEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHH
RIVLAVQQAGIVKIAFITEPPAPGGGE
HHHHEECCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
ARYTRFGHGKGDEDQVLSAINTTPLVDVMLVLLIIFLITVPVVTQTVKMTLPKEQNIPT
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
QTKPENVVLGVGPDSRIYWNMSPVKDQQELLARLVKEAKKDPQPEVHIRGDATARYAPIG
CCCCCEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHH
RIVLAVQQAGIVKIAFITEPPAPGGGE
HHHHEECCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]