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The map label for this gene is exbD4 [H]

Identifier: 34497441

GI number: 34497441

Start: 2163784

End: 2164206

Strand: Direct

Name: exbD4 [H]

Synonym: CV_1986

Alternate gene names: 34497441

Gene position: 2163784-2164206 (Clockwise)

Preceding gene: 34497440

Following gene: 34497442

Centisome position: 45.54

GC content: 60.52

Gene sequence:

>423_bases
ATGGCGATGAATGTGGGGTCGTCGGGAGAAGACGACCTGATGATGGAGATCAACACCACGCCGCTGATCGACGTGATGTT
GGTGATGCTGATCATGCTGATCATCACGATACCGATCCAGACGCACGCGGTGAAGCTGGACATGCCGGTGAACACGCCGT
CGAAGGTGCAGGTGAAGCCGGTGGTGGTGCAGATCGACATTGCGCCGGACAACGGGGTGATGTGGAACGGCGAGCGTTTG
GCGAACCGCGAGGCGTTGGAGGCGAAGCTGTCGGCGGCGGGGAAGTCGGAGCCGCAGCCGGAGCTGCACATCAAGCCGAA
CAAGGATGCGAGTTACGCGCCGGTGGCGATGGTGCTGGCGGAGTCGCAGCGTTTGGGTTTGACGAAGCTGGGCATCGTCG
GATCGGAACAGTTTGTTCAGTAA

Upstream 100 bases:

>100_bases
ATCGGCCGCATCGTGCTGGCGGTGCAGCAGGCGGGGATCGTGAAGATCGCGTTCATCACGGAGCCGCCGGCGCCCGGCGG
CGGGGAGTAGGAGAAGAGAC

Downstream 100 bases:

>100_bases
GCTGGTCTTTATGATCTGACAGGAAAGGCAGCTGCGGCTGCCTTTCTTTTCTCTGGCGCATGAGTGGAGATTTGCAATGA
AGATGAAAGCATTGGCGTTG

Product: biopolymer transport exbD transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MAMNVGSSGEDDLMMEINTTPLIDVMLVMLIMLIITIPIQTHAVKLDMPVNTPSKVQVKPVVVQIDIAPDNGVMWNGERL
ANREALEAKLSAAGKSEPQPELHIKPNKDASYAPVAMVLAESQRLGLTKLGIVGSEQFVQ

Sequences:

>Translated_140_residues
MAMNVGSSGEDDLMMEINTTPLIDVMLVMLIMLIITIPIQTHAVKLDMPVNTPSKVQVKPVVVQIDIAPDNGVMWNGERL
ANREALEAKLSAAGKSEPQPELHIKPNKDASYAPVAMVLAESQRLGLTKLGIVGSEQFVQ
>Mature_139_residues
AMNVGSSGEDDLMMEINTTPLIDVMLVMLIMLIITIPIQTHAVKLDMPVNTPSKVQVKPVVVQIDIAPDNGVMWNGERLA
NREALEAKLSAAGKSEPQPELHIKPNKDASYAPVAMVLAESQRLGLTKLGIVGSEQFVQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=139, Percent_Identity=30.9352517985612, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15158; Mature: 15027

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNVGSSGEDDLMMEINTTPLIDVMLVMLIMLIITIPIQTHAVKLDMPVNTPSKVQVKP
CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEE
VVVQIDIAPDNGVMWNGERLANREALEAKLSAAGKSEPQPELHIKPNKDASYAPVAMVLA
EEEEEEECCCCCEEECCHHHCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEE
ESQRLGLTKLGIVGSEQFVQ
CCCCCCEEEEEECCCHHHCC
>Mature Secondary Structure 
AMNVGSSGEDDLMMEINTTPLIDVMLVMLIMLIITIPIQTHAVKLDMPVNTPSKVQVKP
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEE
VVVQIDIAPDNGVMWNGERLANREALEAKLSAAGKSEPQPELHIKPNKDASYAPVAMVLA
EEEEEEECCCCCEEECCHHHCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEE
ESQRLGLTKLGIVGSEQFVQ
CCCCCCEEEEEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]