Definition Chromobacterium violaceum ATCC 12472 chromosome, complete genome.
Accession NC_005085
Length 4,751,080

Click here to switch to the map view.

The map label for this gene is 34497407

Identifier: 34497407

GI number: 34497407

Start: 2125232

End: 2126059

Strand: Direct

Name: 34497407

Synonym: CV_1952

Alternate gene names: NA

Gene position: 2125232-2126059 (Clockwise)

Preceding gene: 34497406

Following gene: 34497408

Centisome position: 44.73

GC content: 67.87

Gene sequence:

>828_bases
ATGAACCACGCACAATCGCTTTATCCGCTGATCGAAAGGGCGCTGCTGTGCCCGGTGCTGGAAGACAAGCTGGCGCTGGC
CGAGCGCCTGCATCGCGACTGGCGGGCCGGGATGCTGGCCCGGCTGGCGTCTCCCGCTCCTTATCCTTTGCCCGAGCCGG
GGCGGCCCGAGCGGCCGGAGCTGGTGCACCCTGCCCGCGTGCCCAAGCGCAGCCTGTCCACCCGCCGCGGCCACGGCGCG
CTGCTGCACGCGATCGCCCACATCGAGTTCAACGCGGTCAACCTGGCGCTGGACGCCGCCTGGCGTTTTCGCGACATGCC
GGACGAATTCGTCGACGATTGGCTGAAGGTGGCGGCCGAGGAGGCCGGGCATTTCCGCCTGCTGCAGGGACGCTTGGCCG
AACTGGGCTTTTCCTATGGCGATTTCCCCGCGCATGACGGCCTGTGGGCCATGTGCCGCAAAACCGATCGCGACGCGATG
GTCAGGATGGCGCTGGTGCCCCGGGTGCTGGAGGCGAGGGGGCTGGATGTCACGCCCGGCATCCAGCGCAGGCTGGCTGG
CATAGGCGATCATGCCAGCGTGGCGGTGCTGGACGTCATCCTGCGCGACGAGGTCGGCCATGTGCTGATAGGAAACCGCT
GGTTCGTCCGGCTGTGCCGCGAAAGAGGGCTGGAACCCCAGGCCACTTTCCGCGGTCTGCTCGAACAGCACGCGATGCAG
CTGCATCCGGGCGATTACAATCTGGACGCCCGCGCCGCCGCCGGTTTTTTCGCCGACGAGCTGGAAGCGCTGGCGCGTCT
GACCGAATCCGTCTCAGACGGCCGTTGA

Upstream 100 bases:

>100_bases
CCAGGGCGAAACGGTCGCCGAATAGCGCCGCCCGCCATTCGGGCCAGTCCATTCCGCCCAGGCTTGGCCTGGATGCGGGC
CGGGCTTAGAATCCGCTCTC

Downstream 100 bases:

>100_bases
ATCTTCATCGAAGCAGATATTCATGATCAAGCTGATTTATCGCATGCGCGACAACCGCAGGCTGGCCACCGCCATGCTGC
TGCTGTCCACGCTGGTCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MNHAQSLYPLIERALLCPVLEDKLALAERLHRDWRAGMLARLASPAPYPLPEPGRPERPELVHPARVPKRSLSTRRGHGA
LLHAIAHIEFNAVNLALDAAWRFRDMPDEFVDDWLKVAAEEAGHFRLLQGRLAELGFSYGDFPAHDGLWAMCRKTDRDAM
VRMALVPRVLEARGLDVTPGIQRRLAGIGDHASVAVLDVILRDEVGHVLIGNRWFVRLCRERGLEPQATFRGLLEQHAMQ
LHPGDYNLDARAAAGFFADELEALARLTESVSDGR

Sequences:

>Translated_275_residues
MNHAQSLYPLIERALLCPVLEDKLALAERLHRDWRAGMLARLASPAPYPLPEPGRPERPELVHPARVPKRSLSTRRGHGA
LLHAIAHIEFNAVNLALDAAWRFRDMPDEFVDDWLKVAAEEAGHFRLLQGRLAELGFSYGDFPAHDGLWAMCRKTDRDAM
VRMALVPRVLEARGLDVTPGIQRRLAGIGDHASVAVLDVILRDEVGHVLIGNRWFVRLCRERGLEPQATFRGLLEQHAMQ
LHPGDYNLDARAAAGFFADELEALARLTESVSDGR
>Mature_275_residues
MNHAQSLYPLIERALLCPVLEDKLALAERLHRDWRAGMLARLASPAPYPLPEPGRPERPELVHPARVPKRSLSTRRGHGA
LLHAIAHIEFNAVNLALDAAWRFRDMPDEFVDDWLKVAAEEAGHFRLLQGRLAELGFSYGDFPAHDGLWAMCRKTDRDAM
VRMALVPRVLEARGLDVTPGIQRRLAGIGDHASVAVLDVILRDEVGHVLIGNRWFVRLCRERGLEPQATFRGLLEQHAMQ
LHPGDYNLDARAAAGFFADELEALARLTESVSDGR

Specific function: Unknown

COG id: COG2833

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007402
- InterPro:   IPR009078
- InterPro:   IPR011197 [H]

Pfam domain/function: PF04305 DUF455 [H]

EC number: NA

Molecular weight: Translated: 30796; Mature: 30796

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHAQSLYPLIERALLCPVLEDKLALAERLHRDWRAGMLARLASPAPYPLPEPGRPERPE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
LVHPARVPKRSLSTRRGHGALLHAIAHIEFNAVNLALDAAWRFRDMPDEFVDDWLKVAAE
CCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EAGHFRLLQGRLAELGFSYGDFPAHDGLWAMCRKTDRDAMVRMALVPRVLEARGLDVTPG
HCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHH
IQRRLAGIGDHASVAVLDVILRDEVGHVLIGNRWFVRLCRERGLEPQATFRGLLEQHAMQ
HHHHHHCCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LHPGDYNLDARAAAGFFADELEALARLTESVSDGR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNHAQSLYPLIERALLCPVLEDKLALAERLHRDWRAGMLARLASPAPYPLPEPGRPERPE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
LVHPARVPKRSLSTRRGHGALLHAIAHIEFNAVNLALDAAWRFRDMPDEFVDDWLKVAAE
CCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EAGHFRLLQGRLAELGFSYGDFPAHDGLWAMCRKTDRDAMVRMALVPRVLEARGLDVTPG
HCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHH
IQRRLAGIGDHASVAVLDVILRDEVGHVLIGNRWFVRLCRERGLEPQATFRGLLEQHAMQ
HHHHHHCCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LHPGDYNLDARAAAGFFADELEALARLTESVSDGR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]