Click here to switch to the map view.

The map label for this gene is yfiN [C]

Identifier: 34497306

GI number: 34497306

Start: 2005102

End: 2006739

Strand: Reverse

Name: yfiN [C]

Synonym: CV_1851

Alternate gene names: 34497306

Gene position: 2006739-2005102 (Counterclockwise)

Preceding gene: 34497307

Following gene: 34497305

Centisome position: 42.24

GC content: 67.46

Gene sequence:

>1638_bases
CTGAACCGGAGCGAGCGGAACATGAAAGCGGACATGAAGGTCAGACGCCTGCTGGACAGCATCATCATCCGCCTGCTGGC
GCTGTCTCTGGCCATCATGATCATCGGCGTGCTGTCGCGCTACTACACGCTGGGTTCCTTCCTGAGGCAGGACCTGGGCC
AGGTCGTGTCCGAGCAGCAGCTGGCGCTGGCGGGCTACGTCGCCCACGACATCGACGACAAGATCAACCAGCGCAAGGCG
CTGCTGTCGCGCCTGGCCACCGCGCTTCCGCCCGAGCTGCTGGACAACCCGGACGCCCTGCGCGCCTGGTTGAAGGAGCG
CTATCAATATCAGCCGCTGTTCACCATCGGCCTGTTCGTGGTGCGCCCCGACGGCCGCGCGATCGCCGACTACCCGGTGG
TGCCGCACCGCATGCAGGTCAACTACGGCGACCGCGACTATATCCAGCAGTCGCTCGCCGGCCAGTTCTACATCGGCAAG
GCGGTCACCGGCCGCAGTTCGGGCGTCCCGGTGCTGCCGATGTCGGCCCCGATACGGATCGGCGGCGAAGTGCCGGCCGT
GCTGGTGGGCGTCACCGCCATCTCCGCGCCGGGCTTTCTCGACCTGCTGCAGCAGTCGCGGATCGGCGATCACCGCGACA
GCTTCCTGCTGGTTTCCCCGCGTGACCGCCAGATCATCGCCGCCTCGCAAAGCGAGCTGACGCTGCAATCCACTCCGGCG
CCGGGGCAGAACCCGCTATACGACCAGGCGATGGCCGGCTATCGAGGCGCCGCCGTGGCCGCCACGCCGCAAGGCGAGGA
GGAAGTGCGCGCCGTGGTCCAGGTGCCGAGCACCGGCTGGTTCCTCGTGGCCCGCCTGCCCGGCAGCGAGGCTTTCGCCA
CCGTGGCGCGGGTACAAAACTTCACCCTGCGCCAGGCGCTGATCGCCTTCCTCGTGTTTTCGGTGCTGGCCTGCGGCGGC
ATGTACATCGTGCTGCGTCCGCTGTTCCGCGCCGCGCGGCACGCCGACAGGATGACCAGGGGGGAGTTGCCGCTGGAGCC
GCTGCCGATACGCCGCAAGGACGAAGTCGGCCATCTGATCGCCGCCTTCAACCGCCTGCTGCGCAAGCTGGAGGACAAGC
AGACCGAGCTGGCGCAGATGGCCCATCACGATGCCTTGACCGGCCTGCCCAACCGCTCTTTGCTGTCCGACCGGCTGCAC
GTCGCGCTGGCCCAGGCCCAGCGCCGCGACACCCGCTTGGCGCTGCTGTTCATGGACCTGGACAGCTTCAAGCTGATCAA
CGACAGCCTCGGCCACAAGGCGGGCGACAAGGTGCTGTGGCAGGCGGCCCAGCGCCTGTCCGGCATCGTCAGGCAAAGCG
ACACGCTGGCGCGGATAGGAGGCGACGAATTCGTGCTGCTCATCAGCGATCTGGACGACAAGGCCGAGGACGTCGCCCGC
ACCGTGGCCAACAAATGCCTGGAGGCCTTCAATGTCCCCTTCCTGGTCTCCGGCACCGCCTGCCAGCTGGGCATTTCGAT
CGGCATCGCCATCGGCGACGGCTACAGCAGCGCGGACAGCTTGCTGCAAGCGGCCGACCAGGCGATGTACCGCGTCAAGA
AAACCGGCAGCAGCGGCAGCGCCACCATCTGCCTCTAG

Upstream 100 bases:

>100_bases
TGGACAGCGCGCCCAGGCTGCTGCTTTTGCTGGAAGGATGCTGCCGAGAGCTGGAGCAATGGTTGACCCAGCGCGAGGAA
AGCGGCAGCCTGAGTCCAGG

Downstream 100 bases:

>100_bases
CGCGGCGGGCCATCCGCACGCGCCAGGCTCGCCGGCTATGATGACATATCGCCCACGCAGCTCCGACCAACGGTTTTCCG
CATCGAGAGGCGCACCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MNRSERNMKADMKVRRLLDSIIIRLLALSLAIMIIGVLSRYYTLGSFLRQDLGQVVSEQQLALAGYVAHDIDDKINQRKA
LLSRLATALPPELLDNPDALRAWLKERYQYQPLFTIGLFVVRPDGRAIADYPVVPHRMQVNYGDRDYIQQSLAGQFYIGK
AVTGRSSGVPVLPMSAPIRIGGEVPAVLVGVTAISAPGFLDLLQQSRIGDHRDSFLLVSPRDRQIIAASQSELTLQSTPA
PGQNPLYDQAMAGYRGAAVAATPQGEEEVRAVVQVPSTGWFLVARLPGSEAFATVARVQNFTLRQALIAFLVFSVLACGG
MYIVLRPLFRAARHADRMTRGELPLEPLPIRRKDEVGHLIAAFNRLLRKLEDKQTELAQMAHHDALTGLPNRSLLSDRLH
VALAQAQRRDTRLALLFMDLDSFKLINDSLGHKAGDKVLWQAAQRLSGIVRQSDTLARIGGDEFVLLISDLDDKAEDVAR
TVANKCLEAFNVPFLVSGTACQLGISIGIAIGDGYSSADSLLQAADQAMYRVKKTGSSGSATICL

Sequences:

>Translated_545_residues
MNRSERNMKADMKVRRLLDSIIIRLLALSLAIMIIGVLSRYYTLGSFLRQDLGQVVSEQQLALAGYVAHDIDDKINQRKA
LLSRLATALPPELLDNPDALRAWLKERYQYQPLFTIGLFVVRPDGRAIADYPVVPHRMQVNYGDRDYIQQSLAGQFYIGK
AVTGRSSGVPVLPMSAPIRIGGEVPAVLVGVTAISAPGFLDLLQQSRIGDHRDSFLLVSPRDRQIIAASQSELTLQSTPA
PGQNPLYDQAMAGYRGAAVAATPQGEEEVRAVVQVPSTGWFLVARLPGSEAFATVARVQNFTLRQALIAFLVFSVLACGG
MYIVLRPLFRAARHADRMTRGELPLEPLPIRRKDEVGHLIAAFNRLLRKLEDKQTELAQMAHHDALTGLPNRSLLSDRLH
VALAQAQRRDTRLALLFMDLDSFKLINDSLGHKAGDKVLWQAAQRLSGIVRQSDTLARIGGDEFVLLISDLDDKAEDVAR
TVANKCLEAFNVPFLVSGTACQLGISIGIAIGDGYSSADSLLQAADQAMYRVKKTGSSGSATICL
>Mature_545_residues
MNRSERNMKADMKVRRLLDSIIIRLLALSLAIMIIGVLSRYYTLGSFLRQDLGQVVSEQQLALAGYVAHDIDDKINQRKA
LLSRLATALPPELLDNPDALRAWLKERYQYQPLFTIGLFVVRPDGRAIADYPVVPHRMQVNYGDRDYIQQSLAGQFYIGK
AVTGRSSGVPVLPMSAPIRIGGEVPAVLVGVTAISAPGFLDLLQQSRIGDHRDSFLLVSPRDRQIIAASQSELTLQSTPA
PGQNPLYDQAMAGYRGAAVAATPQGEEEVRAVVQVPSTGWFLVARLPGSEAFATVARVQNFTLRQALIAFLVFSVLACGG
MYIVLRPLFRAARHADRMTRGELPLEPLPIRRKDEVGHLIAAFNRLLRKLEDKQTELAQMAHHDALTGLPNRSLLSDRLH
VALAQAQRRDTRLALLFMDLDSFKLINDSLGHKAGDKVLWQAAQRLSGIVRQSDTLARIGGDEFVLLISDLDDKAEDVAR
TVANKCLEAFNVPFLVSGTACQLGISIGIAIGDGYSSADSLLQAADQAMYRVKKTGSSGSATICL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1788956, Length=179, Percent_Identity=35.7541899441341, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=39.4117647058824, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=36.0759493670886, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=31.7073170731707, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=36.4705882352941, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=31.9526627218935, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=32.9268292682927, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=155, Percent_Identity=32.258064516129, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI87082007, Length=176, Percent_Identity=31.25, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1787802, Length=200, Percent_Identity=29.5, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=87, Percent_Identity=37.9310344827586, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=194, Percent_Identity=25.7731958762887, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081921, Length=169, Percent_Identity=26.6272189349112, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 59671; Mature: 59671

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSERNMKADMKVRRLLDSIIIRLLALSLAIMIIGVLSRYYTLGSFLRQDLGQVVSEQQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALAGYVAHDIDDKINQRKALLSRLATALPPELLDNPDALRAWLKERYQYQPLFTIGLFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEEEEEE
VRPDGRAIADYPVVPHRMQVNYGDRDYIQQSLAGQFYIGKAVTGRSSGVPVLPMSAPIRI
ECCCCCEEECCCCCCCEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCEEEECCCCEEE
GGEVPAVLVGVTAISAPGFLDLLQQSRIGDHRDSFLLVSPRDRQIIAASQSELTLQSTPA
CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCEEEECCCC
PGQNPLYDQAMAGYRGAAVAATPQGEEEVRAVVQVPSTGWFLVARLPGSEAFATVARVQN
CCCCCCHHHHHCCCCCCEEEECCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHH
FTLRQALIAFLVFSVLACGGMYIVLRPLFRAARHADRMTRGELPLEPLPIRRKDEVGHLI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
AAFNRLLRKLEDKQTELAQMAHHDALTGLPNRSLLSDRLHVALAQAQRRDTRLALLFMDL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
DSFKLINDSLGHKAGDKVLWQAAQRLSGIVRQSDTLARIGGDEFVLLISDLDDKAEDVAR
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEECCCHHHHHHHH
TVANKCLEAFNVPFLVSGTACQLGISIGIAIGDGYSSADSLLQAADQAMYRVKKTGSSGS
HHHHHHHHHHCCCEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC
ATICL
EEEEC
>Mature Secondary Structure
MNRSERNMKADMKVRRLLDSIIIRLLALSLAIMIIGVLSRYYTLGSFLRQDLGQVVSEQQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALAGYVAHDIDDKINQRKALLSRLATALPPELLDNPDALRAWLKERYQYQPLFTIGLFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEEEEEE
VRPDGRAIADYPVVPHRMQVNYGDRDYIQQSLAGQFYIGKAVTGRSSGVPVLPMSAPIRI
ECCCCCEEECCCCCCCEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCEEEECCCCEEE
GGEVPAVLVGVTAISAPGFLDLLQQSRIGDHRDSFLLVSPRDRQIIAASQSELTLQSTPA
CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCEEEECCCC
PGQNPLYDQAMAGYRGAAVAATPQGEEEVRAVVQVPSTGWFLVARLPGSEAFATVARVQN
CCCCCCHHHHHCCCCCCEEEECCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHH
FTLRQALIAFLVFSVLACGGMYIVLRPLFRAARHADRMTRGELPLEPLPIRRKDEVGHLI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
AAFNRLLRKLEDKQTELAQMAHHDALTGLPNRSLLSDRLHVALAQAQRRDTRLALLFMDL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
DSFKLINDSLGHKAGDKVLWQAAQRLSGIVRQSDTLARIGGDEFVLLISDLDDKAEDVAR
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEECCCHHHHHHHH
TVANKCLEAFNVPFLVSGTACQLGISIGIAIGDGYSSADSLLQAADQAMYRVKKTGSSGS
HHHHHHHHHHCCCEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC
ATICL
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]