| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34497203
Identifier: 34497203
GI number: 34497203
Start: 1899096
End: 1900754
Strand: Direct
Name: 34497203
Synonym: CV_1748
Alternate gene names: NA
Gene position: 1899096-1900754 (Clockwise)
Preceding gene: 34497202
Following gene: 34497223
Centisome position: 39.97
GC content: 67.93
Gene sequence:
>1659_bases ATGCTGACTTATTCCGCTCAGGCCAGCTCGCTGGCCAAGCCGACCGAAAAACCCTGGATGCTGTTGCTGCTGTGCTTCAT CTGGCTGTGGCCCGGCATTCTGGGGCACGATCCCTGGAAACCGGACGAACCCTTCGTGCTGGCTGTCGCGCAAGGCATGC TGGACAGCGGTAATTGGCTGCTGCCCACGCTCAACGGCGCGCCGTATCTCGAAAATCCCCCCTTGTACTACTGGCTGGCG GCCGGCTGCATCAAGCTGTTCTCGTCCTGGCTGCTGCCCGCGCACGACGCGGCCCGGCTGGCGACGCCCTTGTTGATGTC GCTGTCGCTGCTGCTGGCCGGCATGGCGGGCCGCGACCTGATAGGCCGCCGCCACGGCCGCAGCGTGGTGATGATACTGA TAGGCTGCATCGGCCTGGTGGAGTCGGGCCACCAGCTGACGCCCAGCGTCGCCAGCTTCGCCGGCCTCACCGCCGCGTTC TACGCGCTGTCGCTGGCGCTGCGCTCGCCAGGGCTCGCCGGCGCGGTATTGGGCGCGGCCAGCGTGGCCATCTTCCTGGG CGGCAGCCTGCTGGACCTGGCGCTGATCTGGCTGGTGGCGCTGATGCTGCCCGCCTTCAGCGGCTGGCGGCGGAAGAACT ACGCGATCACGCTGCTGCTGGGGCTGCTGCTGGCGCTGCCCGCCATCCTGGTATGGCCGATGCTGCTGCAGCGTCTGTAT CCGGCGGTGTACGCCGAGTGGTGGGGCGGCTACGCGCTGGGGCAGACCAGCGGCTTCCATCATATCCGCCTGTTCCATGA CTTCGGCTATTACAGCCTGAACGTGCTGTGGTTCGCTTTTCCGGCCTGGCCGCTCGCCTTGTGGACGCTGTACCGCCACC GGCTGCCGCAGTCGCCCAAGCTGCAGCTGCCGCTGCTGTTCGCGCTGATGAACGCGGTGCTGCTGACGTTGTCGGACCGC ACCAACATCACCGACGCGATGCCGCTGCTGCTGCCGCTGGCCGTGCTGGGCGCGGTGGAGCTGGACAATCTGCGGCGCGG CGCCGCAGCCTTCCTCAACTGGTTCGCGCTGATGACCTTCGGCCTGTTCGGCCTGCTGGTGTGGCTGGGCTGGGCGGCGA TGAACTATGGCTGGCCAGAGGGCTTGGCCGGGCGCGCGCAGTACTTCAGCCCCTTCTACCAGCCGCATGTCTCCTGGCTG CAGGCTGCAGGCGGCCTGATTGCCACCCTGGTGTGGCTGTGGGCGCTGACCCGGCCCCATCTGCGCGGCCGCCAGGCGAT CACCAACTGGGCGGCCGGGCTGACGCTGCTGTGGGGGCTGGGCATGACCTTGTGGCTGCCGTGGTTCGACGCCGCCAAGA GTTACCGCCCGGTGGTGAACAGCATGCTGCGCAAGCTGCCTGCCACGGCCACCTGCATCGCGACGGAAAACCGCAACAGC CTGGCCATGATCAGCTGGCGCTACTACGCCGGCATCGACCTGCTGTCCTTCCCATCCGGGGAGACGCCGCCGTGCGATTA CTGGCTGGTGGTGCGCAGCAGCGAGGAGGGCGTGGCCGAGCCAGGCTGGCAGGTGCTGTGGACCGGCAACCGCCCGCGCG AGCAGAACATGACCTTCGCGCTGCTGCAGCGGCTGCCGCAGGCGAAAGCGCCCAAGTAA
Upstream 100 bases:
>100_bases TGGACCCCGAAAAAGGCAGCCTGCGGCTGCCTTTTTTCATTCCTGCGCAGCATGCGTGGGATAATCATCAGATCCTTCGG AACAACAAGGTGGCAAACGG
Downstream 100 bases:
>100_bases GGGCGGCCGGCTGCGAAGAAGCCGTTCCGGGTCAATGCCGGGACGGCTTTTTTCATGGCGGACAGCCGCCGGAGGACACA TCCCCGGCATGCCGCCGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: Glycosyltransferase; Transmembrane Protein; Inner Membrane Protein; 4-Amino-4-Deoxy-L-Arabinose Transferase; Inner Membrane Transmembrane Protein; Glycosyl Transferase Family; Glycosyltransferase Pmt Family
Number of amino acids: Translated: 552; Mature: 552
Protein sequence:
>552_residues MLTYSAQASSLAKPTEKPWMLLLLCFIWLWPGILGHDPWKPDEPFVLAVAQGMLDSGNWLLPTLNGAPYLENPPLYYWLA AGCIKLFSSWLLPAHDAARLATPLLMSLSLLLAGMAGRDLIGRRHGRSVVMILIGCIGLVESGHQLTPSVASFAGLTAAF YALSLALRSPGLAGAVLGAASVAIFLGGSLLDLALIWLVALMLPAFSGWRRKNYAITLLLGLLLALPAILVWPMLLQRLY PAVYAEWWGGYALGQTSGFHHIRLFHDFGYYSLNVLWFAFPAWPLALWTLYRHRLPQSPKLQLPLLFALMNAVLLTLSDR TNITDAMPLLLPLAVLGAVELDNLRRGAAAFLNWFALMTFGLFGLLVWLGWAAMNYGWPEGLAGRAQYFSPFYQPHVSWL QAAGGLIATLVWLWALTRPHLRGRQAITNWAAGLTLLWGLGMTLWLPWFDAAKSYRPVVNSMLRKLPATATCIATENRNS LAMISWRYYAGIDLLSFPSGETPPCDYWLVVRSSEEGVAEPGWQVLWTGNRPREQNMTFALLQRLPQAKAPK
Sequences:
>Translated_552_residues MLTYSAQASSLAKPTEKPWMLLLLCFIWLWPGILGHDPWKPDEPFVLAVAQGMLDSGNWLLPTLNGAPYLENPPLYYWLA AGCIKLFSSWLLPAHDAARLATPLLMSLSLLLAGMAGRDLIGRRHGRSVVMILIGCIGLVESGHQLTPSVASFAGLTAAF YALSLALRSPGLAGAVLGAASVAIFLGGSLLDLALIWLVALMLPAFSGWRRKNYAITLLLGLLLALPAILVWPMLLQRLY PAVYAEWWGGYALGQTSGFHHIRLFHDFGYYSLNVLWFAFPAWPLALWTLYRHRLPQSPKLQLPLLFALMNAVLLTLSDR TNITDAMPLLLPLAVLGAVELDNLRRGAAAFLNWFALMTFGLFGLLVWLGWAAMNYGWPEGLAGRAQYFSPFYQPHVSWL QAAGGLIATLVWLWALTRPHLRGRQAITNWAAGLTLLWGLGMTLWLPWFDAAKSYRPVVNSMLRKLPATATCIATENRNS LAMISWRYYAGIDLLSFPSGETPPCDYWLVVRSSEEGVAEPGWQVLWTGNRPREQNMTFALLQRLPQAKAPK >Mature_552_residues MLTYSAQASSLAKPTEKPWMLLLLCFIWLWPGILGHDPWKPDEPFVLAVAQGMLDSGNWLLPTLNGAPYLENPPLYYWLA AGCIKLFSSWLLPAHDAARLATPLLMSLSLLLAGMAGRDLIGRRHGRSVVMILIGCIGLVESGHQLTPSVASFAGLTAAF YALSLALRSPGLAGAVLGAASVAIFLGGSLLDLALIWLVALMLPAFSGWRRKNYAITLLLGLLLALPAILVWPMLLQRLY PAVYAEWWGGYALGQTSGFHHIRLFHDFGYYSLNVLWFAFPAWPLALWTLYRHRLPQSPKLQLPLLFALMNAVLLTLSDR TNITDAMPLLLPLAVLGAVELDNLRRGAAAFLNWFALMTFGLFGLLVWLGWAAMNYGWPEGLAGRAQYFSPFYQPHVSWL QAAGGLIATLVWLWALTRPHLRGRQAITNWAAGLTLLWGLGMTLWLPWFDAAKSYRPVVNSMLRKLPATATCIATENRNS LAMISWRYYAGIDLLSFPSGETPPCDYWLVVRSSEEGVAEPGWQVLWTGNRPREQNMTFALLQRLPQAKAPK
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61189; Mature: 61189
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTYSAQASSLAKPTEKPWMLLLLCFIWLWPGILGHDPWKPDEPFVLAVAQGMLDSGNWL CCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCHHCCCCCCCCCCCEEEEEHHHHHCCCCEE LPTLNGAPYLENPPLYYWLAAGCIKLFSSWLLPAHDAARLATPLLMSLSLLLAGMAGRDL EECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH IGRRHGRSVVMILIGCIGLVESGHQLTPSVASFAGLTAAFYALSLALRSPGLAGAVLGAA HHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH SVAIFLGGSLLDLALIWLVALMLPAFSGWRRKNYAITLLLGLLLALPAILVWPMLLQRLY HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH PAVYAEWWGGYALGQTSGFHHIRLFHDFGYYSLNVLWFAFPAWPLALWTLYRHRLPQSPK HHHHHHHHCCEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LQLPLLFALMNAVLLTLSDRTNITDAMPLLLPLAVLGAVELDNLRRGAAAFLNWFALMTF CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLFGLLVWLGWAAMNYGWPEGLAGRAQYFSPFYQPHVSWLQAAGGLIATLVWLWALTRPH HHHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC LRGRQAITNWAAGLTLLWGLGMTLWLPWFDAAKSYRPVVNSMLRKLPATATCIATENRNS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC LAMISWRYYAGIDLLSFPSGETPPCDYWLVVRSSEEGVAEPGWQVLWTGNRPREQNMTFA EEEEEEHHHHCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCHHHH LLQRLPQAKAPK HHHHCCCCCCCC >Mature Secondary Structure MLTYSAQASSLAKPTEKPWMLLLLCFIWLWPGILGHDPWKPDEPFVLAVAQGMLDSGNWL CCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCHHCCCCCCCCCCCEEEEEHHHHHCCCCEE LPTLNGAPYLENPPLYYWLAAGCIKLFSSWLLPAHDAARLATPLLMSLSLLLAGMAGRDL EECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH IGRRHGRSVVMILIGCIGLVESGHQLTPSVASFAGLTAAFYALSLALRSPGLAGAVLGAA HHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH SVAIFLGGSLLDLALIWLVALMLPAFSGWRRKNYAITLLLGLLLALPAILVWPMLLQRLY HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH PAVYAEWWGGYALGQTSGFHHIRLFHDFGYYSLNVLWFAFPAWPLALWTLYRHRLPQSPK HHHHHHHHCCEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LQLPLLFALMNAVLLTLSDRTNITDAMPLLLPLAVLGAVELDNLRRGAAAFLNWFALMTF CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLFGLLVWLGWAAMNYGWPEGLAGRAQYFSPFYQPHVSWLQAAGGLIATLVWLWALTRPH HHHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC LRGRQAITNWAAGLTLLWGLGMTLWLPWFDAAKSYRPVVNSMLRKLPATATCIATENRNS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC LAMISWRYYAGIDLLSFPSGETPPCDYWLVVRSSEEGVAEPGWQVLWTGNRPREQNMTFA EEEEEEHHHHCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCHHHH LLQRLPQAKAPK HHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA