| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is ybgO [C]
Identifier: 34496752
GI number: 34496752
Start: 1365748
End: 1366761
Strand: Direct
Name: ybgO [C]
Synonym: CV_1297
Alternate gene names: 34496752
Gene position: 1365748-1366761 (Clockwise)
Preceding gene: 34496751
Following gene: 34496756
Centisome position: 28.75
GC content: 60.75
Gene sequence:
>1014_bases ATGAGGCCCGGAAAGGGCAGCCAGAGATACCGGGAAAGCGATAGGAATATGAAAAAACTGATTTGCCGAGGATTGCGGGG ATGGCTGTTGGCCTTGCTGTTGGCCATGCCGCTGACCAGCCACGCGCTGGGCTGCTGGAATGGAAGCAACAGCTCCGGCA ACGTCACGTCCACTTTCAACCTGCCCGGCAACTTGTTCGTCTCTGCCAACGCGCCGGTCGGAACCATCATCTGGCAATCG TCATTGCAGAATCTCAGCCTGTATTGCTCGCAGAGCATAGGCGAAAACGTGTATTTCTGGGTGAATCCGAAGAGGGCGAC GCTGGCGCCTGGGCTGCAGATCGGCATTATTTTCAATGGCCAGACCTATACCCAGAGCAGCGGCGCCATCGACACCGGCA TTTACGTGCCGCGGGGAGGCTACGTCAATACCGTCCTGCAATACTCCATCGTGCTGCTGAAGACCGCGGGCGCGCCGTCC AGCGGCTCTTCCTCGATCAACCAGTACTCGGTGTTCCAGCTGGACGGCATCGGCGGCATCAACGCCGCGCCGGGCATCAA CTTCAACCAGCTGATCAACGGCAGCGTGACTTTCACGCCCGGCGGCACCTGCGATCTGAGCGCCAACGGCCAGTACACGA TCAATCTGCCGACTGTCGCCAGCGGACAGTTTCCGGCGGTGGGCAGCGCGATGTCGCGCAATGCTTTCACCATCAGCGCC GTCAATTGCTCCACCGGCGTCAGGACGGCGACTTTCCGCTTCTCGGGAACGGCCGATTCCAACAACCCGGTGTTGTTCGC CAACACCGGCGGTACGGCGCGGGGCGTGGCCATCAATCTGGGCAGCTCGGCCGACGGCGCCAACATCGGCGCCAACACCA CCAACAATACCCGGGTGGTGAACGTGCAGTCTCAGCAAGCGCAGCTGGGCTTGTTCGTGGAATACATGCGGACGGCGAAC ATCGTGCCGGGAAGCTTGCAGACGGCGGTGACGATAGACATGCTGTACCAGTAG
Upstream 100 bases:
>100_bases GCAAGCAGCTGATGGCCAGCTGGGGCAGCGAAGCGGGCCAGCAATGCCGCTTCAGCTACCAATTGCCGCAGAAGCAGGCG GATGCCGTCTGCGCGCCGCA
Downstream 100 bases:
>100_bases GCGGCCCCTCCGCCGGCAATGAAAAAAGCCTTCGGCTGTTCGCGCCGAAGGCTTTTTTGCGTTGCGCCAGGTCAGTTGTA AACGATGGTGACCAGTTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MRPGKGSQRYRESDRNMKKLICRGLRGWLLALLLAMPLTSHALGCWNGSNSSGNVTSTFNLPGNLFVSANAPVGTIIWQS SLQNLSLYCSQSIGENVYFWVNPKRATLAPGLQIGIIFNGQTYTQSSGAIDTGIYVPRGGYVNTVLQYSIVLLKTAGAPS SGSSSINQYSVFQLDGIGGINAAPGINFNQLINGSVTFTPGGTCDLSANGQYTINLPTVASGQFPAVGSAMSRNAFTISA VNCSTGVRTATFRFSGTADSNNPVLFANTGGTARGVAINLGSSADGANIGANTTNNTRVVNVQSQQAQLGLFVEYMRTAN IVPGSLQTAVTIDMLYQ
Sequences:
>Translated_337_residues MRPGKGSQRYRESDRNMKKLICRGLRGWLLALLLAMPLTSHALGCWNGSNSSGNVTSTFNLPGNLFVSANAPVGTIIWQS SLQNLSLYCSQSIGENVYFWVNPKRATLAPGLQIGIIFNGQTYTQSSGAIDTGIYVPRGGYVNTVLQYSIVLLKTAGAPS SGSSSINQYSVFQLDGIGGINAAPGINFNQLINGSVTFTPGGTCDLSANGQYTINLPTVASGQFPAVGSAMSRNAFTISA VNCSTGVRTATFRFSGTADSNNPVLFANTGGTARGVAINLGSSADGANIGANTTNNTRVVNVQSQQAQLGLFVEYMRTAN IVPGSLQTAVTIDMLYQ >Mature_337_residues MRPGKGSQRYRESDRNMKKLICRGLRGWLLALLLAMPLTSHALGCWNGSNSSGNVTSTFNLPGNLFVSANAPVGTIIWQS SLQNLSLYCSQSIGENVYFWVNPKRATLAPGLQIGIIFNGQTYTQSSGAIDTGIYVPRGGYVNTVLQYSIVLLKTAGAPS SGSSSINQYSVFQLDGIGGINAAPGINFNQLINGSVTFTPGGTCDLSANGQYTINLPTVASGQFPAVGSAMSRNAFTISA VNCSTGVRTATFRFSGTADSNNPVLFANTGGTARGVAINLGSSADGANIGANTTNNTRVVNVQSQQAQLGLFVEYMRTAN IVPGSLQTAVTIDMLYQ
Specific function: May Be Involved In A Fimbrial System Chaperoned By Ybgp And Exported By Ybgq. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35366; Mature: 35366
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPGKGSQRYRESDRNMKKLICRGLRGWLLALLLAMPLTSHALGCWNGSNSSGNVTSTFN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEECCCCCCCCEEEEEE LPGNLFVSANAPVGTIIWQSSLQNLSLYCSQSIGENVYFWVNPKRATLAPGLQIGIIFNG CCCEEEEECCCCEEEEEECCCHHCEEEEEECCCCCCEEEEECCCCCEECCCEEEEEEECC QTYTQSSGAIDTGIYVPRGGYVNTVLQYSIVLLKTAGAPSSGSSSINQYSVFQLDGIGGI CEEECCCCCEECCEEECCCCHHHHHHEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCC NAAPGINFNQLINGSVTFTPGGTCDLSANGQYTINLPTVASGQFPAVGSAMSRNAFTISA CCCCCCCHHHEECCEEEECCCCEEEECCCCEEEEECCEECCCCCCCCCHHHCCCEEEEEE VNCSTGVRTATFRFSGTADSNNPVLFANTGGTARGVAINLGSSADGANIGANTTNNTRVV EECCCCCEEEEEEEECCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEE NVQSQQAQLGLFVEYMRTANIVPGSLQTAVTIDMLYQ EEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MRPGKGSQRYRESDRNMKKLICRGLRGWLLALLLAMPLTSHALGCWNGSNSSGNVTSTFN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEECCCCCCCCEEEEEE LPGNLFVSANAPVGTIIWQSSLQNLSLYCSQSIGENVYFWVNPKRATLAPGLQIGIIFNG CCCEEEEECCCCEEEEEECCCHHCEEEEEECCCCCCEEEEECCCCCEECCCEEEEEEECC QTYTQSSGAIDTGIYVPRGGYVNTVLQYSIVLLKTAGAPSSGSSSINQYSVFQLDGIGGI CEEECCCCCEECCEEECCCCHHHHHHEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCC NAAPGINFNQLINGSVTFTPGGTCDLSANGQYTINLPTVASGQFPAVGSAMSRNAFTISA CCCCCCCHHHEECCEEEECCCCEEEECCCCEEEEECCEECCCCCCCCCHHHCCCEEEEEE VNCSTGVRTATFRFSGTADSNNPVLFANTGGTARGVAINLGSSADGANIGANTTNNTRVV EECCCCCEEEEEEEECCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEE NVQSQQAQLGLFVEYMRTANIVPGSLQTAVTIDMLYQ EEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA