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The map label for this gene is fimD [H]

Identifier: 34496751

GI number: 34496751

Start: 1363196

End: 1365751

Strand: Direct

Name: fimD [H]

Synonym: CV_1296

Alternate gene names: 34496751

Gene position: 1363196-1365751 (Clockwise)

Preceding gene: 34496750

Following gene: 34496752

Centisome position: 28.69

GC content: 65.3

Gene sequence:

>2556_bases
ATGACGCACATGACGACACGACAGCCCGCTCGACGGTGGGATCTCAGCCCGCTCAGCCTGCTGATTTTCGGGCTGTTTGG
CGGCCAGGCTACCTGGGCGGACGGGCCTGCGGCGGTCGCCGCAGCGCAGGATGAGGTGCAGTTCAACCCGGTGTTCATCA
ATCAGAACGCCAATGGGAAAAAGGTGGATCTCAGCCGTTTCAACCAGATGGGCGGCGCGTTTCCCGGCAATTACCGGGCC
GATGTCTTCGCCAACGCGGCCTGGATCGGCCGCCGCGACGTGCAGATGAAGGAGCAGGACGAGGGCAGGGTGCTGGCCTG
CTTCAACCGAGCGATGCTGGACGACCTGGGCGTGGATTTTTCCCGGCTGCCGCAGTCCGCCGCGGTGCCGGGCCGAGATG
AGCCGAGCCGCTGCGTGGATATCGCTGCCGTGGTGCCGGGCGCGTTTTCCAGCTTCAACAGCGGCGATCTGCGGTTGGAT
GTCAGCATTCCCCAGAAATACCTGCGGGCCAAGGCGCGCGGCTACGTCGCGCCGGAATACTGGGACGCGGGCGCCCCGTT
CGCCGGCTTCCTCAATTACAACGCCAATAGCTACCGTTACGATAACGGCGGTGCCGGCAAATCTACCCAGTATTATCTCG
GCGCCAACGCGGGCCTCAACATGGGCTTGTGGCGTTTCCGCTATAACGGTTCGCTGACCCAGCAGGATAACGGCAAGGGC
CAGCGCCAGCGCAGCTATCAAAGCGCTTCGGCCTACACCCAGCGCGATGTGACTGCCTGGAGCTCCGTGCTGACCCTGGG
CGATTACTTCACGCCGTCCGACATGTTCAGCAGCGCGCCATTCCGCGGCGTGCAGCTGAGCTCCGATGACCGGATGCTGC
CCGAATCGCTGCAGGGTTATGCGCCGGTGGTGCGCGGCGTGGCCGAGACCAATGCCAAAGTGTCCGTTCGGCAGAATGGC
AACCTGATTTATGAAAACGTGGTGCCGCCGGGCGAATTCAGCATCGACGACCTCTACAACACCGGCTTTTCGGGCGACCT
GGAAGTGACGGTCACCGAGGCGGATGGCCGCGTGCGCAAATTCGTCGTGCCCTATGCCTCCGTGCCCCAGCTGCTGCGCG
AAGGGCAGTCCCGTTACGCGGTCACCGCCGGCCAATGGCGAGACAGCACGCTGAACAAGCGGCCGAACTTCGTGCAGGCG
ACCTATCAGCGCGGCATCAGCAACAGCCTGACCCTGTATGGTGGCCTGATCGCAGCCGACCGCTACCAGTCGGCGCTGTT
CGGCTCCGGCGTGAATACCCCGTGGGGCGCGCTGGCGCTGGACGTGACCCAGTCCTGGGCCAGCGATCTGCCGTTCAATG
CCAGCAGCAGCACGATGCAGGGCCAGAGTTACCGGGTGACCTATAGCAAGCTGATGGAGGCGACGCGCACCAACTTCACG
GTCGCCGCCTATCGCTTTTCCACCGCGGGCTTCCTTGAGCTGCGCGACTATGCCAGCCTGATCAACCAGGTCGGCGTGGT
CTACCGCGCCAAGAACAAGTTTCAGCTGAATGCCGACCAGCCCTTGGGCGACGGCCGCGGGCACGTGTTCCTGACAGGAT
CCACGCAGGATTACTGGAACCAGAAGGGCCGCGACCTGACTTACCAGTTGGGTTACAGCAACAGCTTCAAGTCGGTGAGC
CTGAATCTGTCCGCCGGCCGCACCCAGGATTCGACCGGCCGCATCGTCAACCAGTACATGCTGAGCCTGTCCATGCCCTT
GGGCCGCGAGCCGTCGTCTCCGCTGCTGAGCAGCAGCGTCAGCGGCAGCAGCGACCGCAGCGGCAGCGCCCAAGTCAACC
TGAGCGGCACCACCGGCGAGCTGCGCAACCTCAGCTACAACGTCTACGCCAATGCCAACCGCGACCGCGCGGGCGCCAAC
AGCAGCGGCGGCGGCGGCAGCGTGCAGTACGCGACCTCGGTGGCCACGCTCACCGCCGGCGCCAGCGCCAGCGGCAGCAC
CTCGCAGGCCAACGCGGGCATCAGCGGCGCGCTGGTGTTCCACCCGGGCGGCGTGACCGCGGCTCAATCGCTGGGCGAAT
CCTTCGCCGTAGTCGAGGCGCCGGGCGCGGAAGGCGCCGCGGTGAGCAACACCAACGGCGTTCGCGTCAACAAGAGCGGT
TATGCGGTGGTGTCGTCGCTGATGCCGTATCGCCAGAATGAAATCACGCTCGATCCCAAGGGCATGAGCCAGGATGTGGA
GCTGCAGGAAACCAGCGTGCAGGACGCGCCGCGCGCCGGCGCCATCGTGATGCTGAAGTTCAATACCCAGCAGGGCAAGC
CGGTGATCGTGGCGCTGAAGCGGCCGGACGGCAGCCATCTGCCGGTGGGCGCGACTGTCAGCGGCGGCAATGGCGAGGAC
TTCCTCACCATGGTGGGGCAAGGCGGGCGCGCTTTCCTGCGCGGCATGGAAGGCAAGCAGCTGATGGCCAGCTGGGGCAG
CGAAGCGGGCCAGCAATGCCGCTTCAGCTACCAATTGCCGCAGAAGCAGGCGGATGCCGTCTGCGCGCCGCAATGA

Upstream 100 bases:

>100_bases
ATGATTACGGTGCCCCGGTCGCGCACAGCATATCCCTCGCTCACTGATCATCCCGCTCGAGCCAGCCTGGCCCGCGCGCA
CCCGCAGGACTCAACCAGCC

Downstream 100 bases:

>100_bases
GGCCCGGAAAGGGCAGCCAGAGATACCGGGAAAGCGATAGGAATATGAAAAAACTGATTTGCCGAGGATTGCGGGGATGG
CTGTTGGCCTTGCTGTTGGC

Product: outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 851; Mature: 850

Protein sequence:

>851_residues
MTHMTTRQPARRWDLSPLSLLIFGLFGGQATWADGPAAVAAAQDEVQFNPVFINQNANGKKVDLSRFNQMGGAFPGNYRA
DVFANAAWIGRRDVQMKEQDEGRVLACFNRAMLDDLGVDFSRLPQSAAVPGRDEPSRCVDIAAVVPGAFSSFNSGDLRLD
VSIPQKYLRAKARGYVAPEYWDAGAPFAGFLNYNANSYRYDNGGAGKSTQYYLGANAGLNMGLWRFRYNGSLTQQDNGKG
QRQRSYQSASAYTQRDVTAWSSVLTLGDYFTPSDMFSSAPFRGVQLSSDDRMLPESLQGYAPVVRGVAETNAKVSVRQNG
NLIYENVVPPGEFSIDDLYNTGFSGDLEVTVTEADGRVRKFVVPYASVPQLLREGQSRYAVTAGQWRDSTLNKRPNFVQA
TYQRGISNSLTLYGGLIAADRYQSALFGSGVNTPWGALALDVTQSWASDLPFNASSSTMQGQSYRVTYSKLMEATRTNFT
VAAYRFSTAGFLELRDYASLINQVGVVYRAKNKFQLNADQPLGDGRGHVFLTGSTQDYWNQKGRDLTYQLGYSNSFKSVS
LNLSAGRTQDSTGRIVNQYMLSLSMPLGREPSSPLLSSSVSGSSDRSGSAQVNLSGTTGELRNLSYNVYANANRDRAGAN
SSGGGGSVQYATSVATLTAGASASGSTSQANAGISGALVFHPGGVTAAQSLGESFAVVEAPGAEGAAVSNTNGVRVNKSG
YAVVSSLMPYRQNEITLDPKGMSQDVELQETSVQDAPRAGAIVMLKFNTQQGKPVIVALKRPDGSHLPVGATVSGGNGED
FLTMVGQGGRAFLRGMEGKQLMASWGSEAGQQCRFSYQLPQKQADAVCAPQ

Sequences:

>Translated_851_residues
MTHMTTRQPARRWDLSPLSLLIFGLFGGQATWADGPAAVAAAQDEVQFNPVFINQNANGKKVDLSRFNQMGGAFPGNYRA
DVFANAAWIGRRDVQMKEQDEGRVLACFNRAMLDDLGVDFSRLPQSAAVPGRDEPSRCVDIAAVVPGAFSSFNSGDLRLD
VSIPQKYLRAKARGYVAPEYWDAGAPFAGFLNYNANSYRYDNGGAGKSTQYYLGANAGLNMGLWRFRYNGSLTQQDNGKG
QRQRSYQSASAYTQRDVTAWSSVLTLGDYFTPSDMFSSAPFRGVQLSSDDRMLPESLQGYAPVVRGVAETNAKVSVRQNG
NLIYENVVPPGEFSIDDLYNTGFSGDLEVTVTEADGRVRKFVVPYASVPQLLREGQSRYAVTAGQWRDSTLNKRPNFVQA
TYQRGISNSLTLYGGLIAADRYQSALFGSGVNTPWGALALDVTQSWASDLPFNASSSTMQGQSYRVTYSKLMEATRTNFT
VAAYRFSTAGFLELRDYASLINQVGVVYRAKNKFQLNADQPLGDGRGHVFLTGSTQDYWNQKGRDLTYQLGYSNSFKSVS
LNLSAGRTQDSTGRIVNQYMLSLSMPLGREPSSPLLSSSVSGSSDRSGSAQVNLSGTTGELRNLSYNVYANANRDRAGAN
SSGGGGSVQYATSVATLTAGASASGSTSQANAGISGALVFHPGGVTAAQSLGESFAVVEAPGAEGAAVSNTNGVRVNKSG
YAVVSSLMPYRQNEITLDPKGMSQDVELQETSVQDAPRAGAIVMLKFNTQQGKPVIVALKRPDGSHLPVGATVSGGNGED
FLTMVGQGGRAFLRGMEGKQLMASWGSEAGQQCRFSYQLPQKQADAVCAPQ
>Mature_850_residues
THMTTRQPARRWDLSPLSLLIFGLFGGQATWADGPAAVAAAQDEVQFNPVFINQNANGKKVDLSRFNQMGGAFPGNYRAD
VFANAAWIGRRDVQMKEQDEGRVLACFNRAMLDDLGVDFSRLPQSAAVPGRDEPSRCVDIAAVVPGAFSSFNSGDLRLDV
SIPQKYLRAKARGYVAPEYWDAGAPFAGFLNYNANSYRYDNGGAGKSTQYYLGANAGLNMGLWRFRYNGSLTQQDNGKGQ
RQRSYQSASAYTQRDVTAWSSVLTLGDYFTPSDMFSSAPFRGVQLSSDDRMLPESLQGYAPVVRGVAETNAKVSVRQNGN
LIYENVVPPGEFSIDDLYNTGFSGDLEVTVTEADGRVRKFVVPYASVPQLLREGQSRYAVTAGQWRDSTLNKRPNFVQAT
YQRGISNSLTLYGGLIAADRYQSALFGSGVNTPWGALALDVTQSWASDLPFNASSSTMQGQSYRVTYSKLMEATRTNFTV
AAYRFSTAGFLELRDYASLINQVGVVYRAKNKFQLNADQPLGDGRGHVFLTGSTQDYWNQKGRDLTYQLGYSNSFKSVSL
NLSAGRTQDSTGRIVNQYMLSLSMPLGREPSSPLLSSSVSGSSDRSGSAQVNLSGTTGELRNLSYNVYANANRDRAGANS
SGGGGSVQYATSVATLTAGASASGSTSQANAGISGALVFHPGGVTAAQSLGESFAVVEAPGAEGAAVSNTNGVRVNKSGY
AVVSSLMPYRQNEITLDPKGMSQDVELQETSVQDAPRAGAIVMLKFNTQQGKPVIVALKRPDGSHLPVGATVSGGNGEDF
LTMVGQGGRAFLRGMEGKQLMASWGSEAGQQCRFSYQLPQKQADAVCAPQ

Specific function: Involved in the export and assembly of the F1C fimbriae subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=860, Percent_Identity=34.7674418604651, Blast_Score=446, Evalue=1e-126,
Organism=Escherichia coli, GI1790772, Length=834, Percent_Identity=34.7721822541966, Blast_Score=438, Evalue=1e-124,
Organism=Escherichia coli, GI1786332, Length=809, Percent_Identity=34.9814585908529, Blast_Score=433, Evalue=1e-122,
Organism=Escherichia coli, GI1789533, Length=830, Percent_Identity=33.4939759036145, Blast_Score=426, Evalue=1e-120,
Organism=Escherichia coli, GI1786744, Length=838, Percent_Identity=33.054892601432, Blast_Score=413, Evalue=1e-116,
Organism=Escherichia coli, GI1788427, Length=766, Percent_Identity=33.0287206266319, Blast_Score=399, Evalue=1e-112,
Organism=Escherichia coli, GI87081778, Length=830, Percent_Identity=30.1204819277108, Blast_Score=267, Evalue=2e-72,
Organism=Escherichia coli, GI1789610, Length=802, Percent_Identity=23.4413965087282, Blast_Score=130, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 91383; Mature: 91252

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHMTTRQPARRWDLSPLSLLIFGLFGGQATWADGPAAVAAAQDEVQFNPVFINQNANGK
CCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEECEEEEECCCCCC
KVDLSRFNQMGGAFPGNYRADVFANAAWIGRRDVQMKEQDEGRVLACFNRAMLDDLGVDF
EEEHHHHHHHCCCCCCCCCHHEEECEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHCCCH
SRLPQSAAVPGRDEPSRCVDIAAVVPGAFSSFNSGDLRLDVSIPQKYLRAKARGYVAPEY
HHCCCCCCCCCCCCCHHHEEEEHHCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCC
WDAGAPFAGFLNYNANSYRYDNGGAGKSTQYYLGANAGLNMGLWRFRYNGSLTQQDNGKG
CCCCCCEEEEEECCCCCEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCC
QRQRSYQSASAYTQRDVTAWSSVLTLGDYFTPSDMFSSAPFRGVQLSSDDRMLPESLQGY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCCCHHHHHHH
APVVRGVAETNAKVSVRQNGNLIYENVVPPGEFSIDDLYNTGFSGDLEVTVTEADGRVRK
HHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCEEE
FVVPYASVPQLLREGQSRYAVTAGQWRDSTLNKRPNFVQATYQRGISNSLTLYGGLIAAD
EEECCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECEEEHH
RYQSALFGSGVNTPWGALALDVTQSWASDLPFNASSSTMQGQSYRVTYSKLMEATRTNFT
HHHHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCEE
VAAYRFSTAGFLELRDYASLINQVGVVYRAKNKFQLNADQPLGDGRGHVFLTGSTQDYWN
EEEEEECCCCHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCCCCCEEEEECCCHHHHC
QKGRDLTYQLGYSNSFKSVSLNLSAGRTQDSTGRIVNQYMLSLSMPLGREPSSPLLSSSV
CCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
SGSSDRSGSAQVNLSGTTGELRNLSYNVYANANRDRAGANSSGGGGSVQYATSVATLTAG
CCCCCCCCCEEEEEECCCCHHHCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECC
ASASGSTSQANAGISGALVFHPGGVTAAQSLGESFAVVEAPGAEGAAVSNTNGVRVNKSG
CCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCEEEEECCCCCCCEECCCCCEEECCCC
YAVVSSLMPYRQNEITLDPKGMSQDVELQETSVQDAPRAGAIVMLKFNTQQGKPVIVALK
HHHHHHHCCCCCCEEEECCCCCCCCCEEHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEE
RPDGSHLPVGATVSGGNGEDFLTMVGQGGRAFLRGMEGKQLMASWGSEAGQQCRFSYQLP
CCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHCCCCCHHHHHHHCHHHHHHEEEEECCC
QKQADAVCAPQ
CHHCCCCCCCC
>Mature Secondary Structure 
THMTTRQPARRWDLSPLSLLIFGLFGGQATWADGPAAVAAAQDEVQFNPVFINQNANGK
CCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEECEEEEECCCCCC
KVDLSRFNQMGGAFPGNYRADVFANAAWIGRRDVQMKEQDEGRVLACFNRAMLDDLGVDF
EEEHHHHHHHCCCCCCCCCHHEEECEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHCCCH
SRLPQSAAVPGRDEPSRCVDIAAVVPGAFSSFNSGDLRLDVSIPQKYLRAKARGYVAPEY
HHCCCCCCCCCCCCCHHHEEEEHHCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCC
WDAGAPFAGFLNYNANSYRYDNGGAGKSTQYYLGANAGLNMGLWRFRYNGSLTQQDNGKG
CCCCCCEEEEEECCCCCEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCC
QRQRSYQSASAYTQRDVTAWSSVLTLGDYFTPSDMFSSAPFRGVQLSSDDRMLPESLQGY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCCCHHHHHHH
APVVRGVAETNAKVSVRQNGNLIYENVVPPGEFSIDDLYNTGFSGDLEVTVTEADGRVRK
HHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCEEE
FVVPYASVPQLLREGQSRYAVTAGQWRDSTLNKRPNFVQATYQRGISNSLTLYGGLIAAD
EEECCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECEEEHH
RYQSALFGSGVNTPWGALALDVTQSWASDLPFNASSSTMQGQSYRVTYSKLMEATRTNFT
HHHHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCEE
VAAYRFSTAGFLELRDYASLINQVGVVYRAKNKFQLNADQPLGDGRGHVFLTGSTQDYWN
EEEEEECCCCHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCCCCCEEEEECCCHHHHC
QKGRDLTYQLGYSNSFKSVSLNLSAGRTQDSTGRIVNQYMLSLSMPLGREPSSPLLSSSV
CCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
SGSSDRSGSAQVNLSGTTGELRNLSYNVYANANRDRAGANSSGGGGSVQYATSVATLTAG
CCCCCCCCCEEEEEECCCCHHHCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECC
ASASGSTSQANAGISGALVFHPGGVTAAQSLGESFAVVEAPGAEGAAVSNTNGVRVNKSG
CCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCEEEEECCCCCCCEECCCCCEEECCCC
YAVVSSLMPYRQNEITLDPKGMSQDVELQETSVQDAPRAGAIVMLKFNTQQGKPVIVALK
HHHHHHHCCCCCCEEEECCCCCCCCCEEHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEE
RPDGSHLPVGATVSGGNGEDFLTMVGQGGRAFLRGMEGKQLMASWGSEAGQQCRFSYQLP
CCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHCCCCCHHHHHHHCHHHHHHEEEEECCC
QKQADAVCAPQ
CHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7836295 [H]