| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34496498
Identifier: 34496498
GI number: 34496498
Start: 1092482
End: 1093303
Strand: Reverse
Name: 34496498
Synonym: CV_1043
Alternate gene names: NA
Gene position: 1093303-1092482 (Counterclockwise)
Preceding gene: 34496499
Following gene: 34496491
Centisome position: 23.01
GC content: 70.32
Gene sequence:
>822_bases ATGACTCCGCAAGAAACCCAAGCGCTGCAAAACTTCCTGAATCAACTGGTGCAAGTCCGCGGCATGGCCAAGGACCCGCA GGCCAACGCCGCTATCATGCAGGCCGCCGCCCAACAGCCGGACGCCGTCTACCTGCTGGTGCTGCGCTGCATGCAGCAGG ACCAGGCGCTGAACGCCGCCAACGCGCAAATCGCCAAGCTGCAGTCCGACCTGCAAGCCGCGCGCAGCGCGCCGGTCCCC GCCCCCGCCGGCGCGCCCGGCACCTTCCTGGATCCCAACGCCGGTTCCGCGGCCTGGGGCGGCGCGCCCGCGGCGCCCGC CTTCGCCGCTCCGCGCCAGGCTGCGCCGGCTCCGGCCTATCAACAGCCCGCGCCCGCCTACCAAGCGGCGCCTCCGGCTT ATCCGCCGGCAGCGCCCGCCTATCAACAAGCCGCGCCAGCCTACCAACAGCCTGCACCGGCGCCGCGCCAGAGCTTCTTC GGCGGCGGCGGCACCGGCGGTTTCGCCAGCGGCGTGGGCAGCTTCCTCGGCAATGTCGCCACCACGGCCGCCGGCGTCGC CGCCGGCACCTTCCTGGTCCAAGGCATAGAAAGCCTGTTCAGCGACGACAAGCCCAGCCACGGCGGCGGACAGGGCAATG CCGGATACGAGGCGGAACAGCCGGTGGAGCAGCACATCACCATCAACAACTACTACGAATCCGACGCCCAGGACGATGCC GGCTACCGGGAGGACGCGCACCCGCGCGACGACTACCAGACCGTGGCCGACTCCGACTACGCCAGCGACGAGTACAGCGA GGACGACAACGCCTCAGCCTGA
Upstream 100 bases:
>100_bases GCCAAACGCATATACAATTCATTTACAAATTAAAGCGACATGCTCAGTCGAGATGGACGCCAGCCGCCCCGTCTCTACCC TTCCCCCGGAAAACCAAGAT
Downstream 100 bases:
>100_bases ACGGCTCCAGGCCGCGCGCCCGCGCGGCCTTTTTCCCGCATCGGCCTTGCATGCCGTCATGCATCGCGCGCTAGCATCCG GCCTCATCATGCATCCCCCC
Product: transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MTPQETQALQNFLNQLVQVRGMAKDPQANAAIMQAAAQQPDAVYLLVLRCMQQDQALNAANAQIAKLQSDLQAARSAPVP APAGAPGTFLDPNAGSAAWGGAPAAPAFAAPRQAAPAPAYQQPAPAYQAAPPAYPPAAPAYQQAAPAYQQPAPAPRQSFF GGGGTGGFASGVGSFLGNVATTAAGVAAGTFLVQGIESLFSDDKPSHGGGQGNAGYEAEQPVEQHITINNYYESDAQDDA GYREDAHPRDDYQTVADSDYASDEYSEDDNASA
Sequences:
>Translated_273_residues MTPQETQALQNFLNQLVQVRGMAKDPQANAAIMQAAAQQPDAVYLLVLRCMQQDQALNAANAQIAKLQSDLQAARSAPVP APAGAPGTFLDPNAGSAAWGGAPAAPAFAAPRQAAPAPAYQQPAPAYQAAPPAYPPAAPAYQQAAPAYQQPAPAPRQSFF GGGGTGGFASGVGSFLGNVATTAAGVAAGTFLVQGIESLFSDDKPSHGGGQGNAGYEAEQPVEQHITINNYYESDAQDDA GYREDAHPRDDYQTVADSDYASDEYSEDDNASA >Mature_272_residues TPQETQALQNFLNQLVQVRGMAKDPQANAAIMQAAAQQPDAVYLLVLRCMQQDQALNAANAQIAKLQSDLQAARSAPVPA PAGAPGTFLDPNAGSAAWGGAPAAPAFAAPRQAAPAPAYQQPAPAYQAAPPAYPPAAPAYQQAAPAYQQPAPAPRQSFFG GGGTGGFASGVGSFLGNVATTAAGVAAGTFLVQGIESLFSDDKPSHGGGQGNAGYEAEQPVEQHITINNYYESDAQDDAG YREDAHPRDDYQTVADSDYASDEYSEDDNASA
Specific function: Unknown
COG id: COG3416
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28084; Mature: 27952
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPQETQALQNFLNQLVQVRGMAKDPQANAAIMQAAAQQPDAVYLLVLRCMQQDQALNAA CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH NAQIAKLQSDLQAARSAPVPAPAGAPGTFLDPNAGSAAWGGAPAAPAFAAPRQAAPAPAY HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QQPAPAYQAAPPAYPPAAPAYQQAAPAYQQPAPAPRQSFFGGGGTGGFASGVGSFLGNVA CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH TTAAGVAAGTFLVQGIESLFSDDKPSHGGGQGNAGYEAEQPVEQHITINNYYESDAQDDA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC GYREDAHPRDDYQTVADSDYASDEYSEDDNASA CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TPQETQALQNFLNQLVQVRGMAKDPQANAAIMQAAAQQPDAVYLLVLRCMQQDQALNAA CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH NAQIAKLQSDLQAARSAPVPAPAGAPGTFLDPNAGSAAWGGAPAAPAFAAPRQAAPAPAY HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QQPAPAYQAAPPAYPPAAPAYQQAAPAYQQPAPAPRQSFFGGGGTGGFASGVGSFLGNVA CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH TTAAGVAAGTFLVQGIESLFSDDKPSHGGGQGNAGYEAEQPVEQHITINNYYESDAQDDA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC GYREDAHPRDDYQTVADSDYASDEYSEDDNASA CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA