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The map label for this gene is psbU [H]

Identifier: 33862451

GI number: 33862451

Start: 201982

End: 202344

Strand: Reverse

Name: psbU [H]

Synonym: PMT0178

Alternate gene names: 33862451

Gene position: 202344-201982 (Counterclockwise)

Preceding gene: 33862452

Following gene: 33862450

Centisome position: 8.39

GC content: 47.93

Gene sequence:

>363_bases
ATGAAGCGGCTGTTGTCCTTGCTTACTGGGGTTCTGGTGATGACAGGCCTGCTAATGGCCCTGATATTTCCCCAGTCCGC
CTACGCCAATGTCTCTGACGACAAACTCGGAGATAGAGGCGAAAAGGTGGACCTAAACAACTCATCAGTACGAGCCTTTA
GACAGTTCCCCGGCATGTTCCCAACCATCGCTGGAAAAATTGTTGTAGGCGGTCCTTATGCCAGCGTGAGTGATGCCTCA
TCAGTTCTTGATGCCTCACAAAAATCTGTTTTCGACAAGTACAAAGACAACTTCACTGTCACAGACCAAGAAATTGCTGT
GAATGAAGGTTTCGATCGGATCAACGACGGTCAATACAGATAA

Upstream 100 bases:

>100_bases
AAAGCTGATCACAGTCCTGGGTTAAGTTCCTGTTCAAACTTGTAAAGTTGGTAGACCGGCATAGCCGGAAGACCTGTTCC
GATCCACTGCGGAGTATTTG

Downstream 100 bases:

>100_bases
ACGATTCCTCACTCAAAAATCAGCTCAACCGCAAGCCGTCGGTTCACCCGGCGGCTTTTTTGTAGGTTTCATGAGTATCT
CTAACCCATCCACGCCCATT

Product: photosystem II complex extrinsic protein precursor U

Products: NA

Alternate protein names: PS II complex 12 kDa extrinsic protein; PSII-U [H]

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKRLLSLLTGVLVMTGLLMALIFPQSAYANVSDDKLGDRGEKVDLNNSSVRAFRQFPGMFPTIAGKIVVGGPYASVSDAS
SVLDASQKSVFDKYKDNFTVTDQEIAVNEGFDRINDGQYR

Sequences:

>Translated_120_residues
MKRLLSLLTGVLVMTGLLMALIFPQSAYANVSDDKLGDRGEKVDLNNSSVRAFRQFPGMFPTIAGKIVVGGPYASVSDAS
SVLDASQKSVFDKYKDNFTVTDQEIAVNEGFDRINDGQYR
>Mature_120_residues
MKRLLSLLTGVLVMTGLLMALIFPQSAYANVSDDKLGDRGEKVDLNNSSVRAFRQFPGMFPTIAGKIVVGGPYASVSDAS
SVLDASQKSVFDKYKDNFTVTDQEIAVNEGFDRINDGQYR

Specific function: Stabilizes the structure of photosystem II oxygen- evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Associated with photosystem II at the lumenal side of the thylakoid membrane (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010527 [H]

Pfam domain/function: PF06514 PsbU [H]

EC number: NA

Molecular weight: Translated: 13101; Mature: 13101

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLLSLLTGVLVMTGLLMALIFPQSAYANVSDDKLGDRGEKVDLNNSSVRAFRQFPGMF
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCC
PTIAGKIVVGGPYASVSDASSVLDASQKSVFDKYKDNFTVTDQEIAVNEGFDRINDGQYR
CHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKRLLSLLTGVLVMTGLLMALIFPQSAYANVSDDKLGDRGEKVDLNNSSVRAFRQFPGMF
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCC
PTIAGKIVVGGPYASVSDASSVLDASQKSVFDKYKDNFTVTDQEIAVNEGFDRINDGQYR
CHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA