| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33862452
Identifier: 33862452
GI number: 33862452
Start: 202456
End: 203247
Strand: Reverse
Name: 33862452
Synonym: PMT0179
Alternate gene names: NA
Gene position: 203247-202456 (Counterclockwise)
Preceding gene: 33862457
Following gene: 33862451
Centisome position: 8.43
GC content: 52.65
Gene sequence:
>792_bases TTGTCCAGCGGCTTAATCAAAAAAAAACAGCCCGACAGCAGCACATTTGTACGGAATCAACCCCTGAGCAATCCTGTCGA ATCGCAAACATCTGAAAAAGATTTCGACGCCAATTTTTCAGACCTTCAGCAATTGCAACTTTGGGCAGGTGCCCTAGTCG TGCTGCCTGTTTTTGTGCAGGCCCCCTGGGTACGCCTGAATCCATTATCAGCCTGCTTATTCACGCTGTTCCTGCTCGCT CTTGGCATTCCCCTTGCCCTCATCGGCCAACGGGGATGGGCGGTGGCTGGCGAACTTTTGGTCGGGGTTAGCGGCAGCTG GCTCGCGGGATGCCTCTACTGGGGATGGCTGAGAACACAGCCCTTGTGGCACTTACCCGTTGAATCTGTAGTGCTGCCTA TTGCCCTGTTGGGGCTTTCAAGCCGCTGGAGATTGAGTTCAAGTTTCTATTTGGCCTCCCTGCTTGGAACAGCTTGCACT GATCTGATGATGGTCATGACCGGCGTCATGAATCAATGGCCTGTTGTGGTGATGGCTCCACTACAGCAAGCACCAAGATT GCTTCACGAAACTGCTCAGCAGCTTCTTCATCCCCTACCCCTTATCGCTCTGGTCTGTGCAGCAACGCTGATCGTGCTGC TGGCGCAAGCTATGCAGCAAAAAACCCGTCTGGCTTCAGAATTTCGCAACACATGGGCTGTAGCCAGTGCAGTACTAGTG ACAACGGTAATAATCGATGGACTTTTCCTGATTGCAGCCCTAATCAACCCAGGGTTGAGCGGCTTGATCTGA
Upstream 100 bases:
>100_bases CCCATGGAGGCTATTGCCCCCATGGATCCAATGCCAAAGCAGCGTAATTCCAGAGAGTCTTATAAGGTTCAATGTCTTGA CTGCATAGTGAGGGGGTGCT
Downstream 100 bases:
>100_bases AACGAACTGCAAAAGCTGATCACAGTCCTGGGTTAAGTTCCTGTTCAAACTTGTAAAGTTGGTAGACCGGCATAGCCGGA AGACCTGTTCCGATCCACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSSGLIKKKQPDSSTFVRNQPLSNPVESQTSEKDFDANFSDLQQLQLWAGALVVLPVFVQAPWVRLNPLSACLFTLFLLA LGIPLALIGQRGWAVAGELLVGVSGSWLAGCLYWGWLRTQPLWHLPVESVVLPIALLGLSSRWRLSSSFYLASLLGTACT DLMMVMTGVMNQWPVVVMAPLQQAPRLLHETAQQLLHPLPLIALVCAATLIVLLAQAMQQKTRLASEFRNTWAVASAVLV TTVIIDGLFLIAALINPGLSGLI
Sequences:
>Translated_263_residues MSSGLIKKKQPDSSTFVRNQPLSNPVESQTSEKDFDANFSDLQQLQLWAGALVVLPVFVQAPWVRLNPLSACLFTLFLLA LGIPLALIGQRGWAVAGELLVGVSGSWLAGCLYWGWLRTQPLWHLPVESVVLPIALLGLSSRWRLSSSFYLASLLGTACT DLMMVMTGVMNQWPVVVMAPLQQAPRLLHETAQQLLHPLPLIALVCAATLIVLLAQAMQQKTRLASEFRNTWAVASAVLV TTVIIDGLFLIAALINPGLSGLI >Mature_262_residues SSGLIKKKQPDSSTFVRNQPLSNPVESQTSEKDFDANFSDLQQLQLWAGALVVLPVFVQAPWVRLNPLSACLFTLFLLAL GIPLALIGQRGWAVAGELLVGVSGSWLAGCLYWGWLRTQPLWHLPVESVVLPIALLGLSSRWRLSSSFYLASLLGTACTD LMMVMTGVMNQWPVVVMAPLQQAPRLLHETAQQLLHPLPLIALVCAATLIVLLAQAMQQKTRLASEFRNTWAVASAVLVT TVIIDGLFLIAALINPGLSGLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28573; Mature: 28442
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSGLIKKKQPDSSTFVRNQPLSNPVESQTSEKDFDANFSDLQQLQLWAGALVVLPVFVQ CCCCCCCCCCCCCCCHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH APWVRLNPLSACLFTLFLLALGIPLALIGQRGWAVAGELLVGVSGSWLAGCLYWGWLRTQ CCCCEECHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCC PLWHLPVESVVLPIALLGLSSRWRLSSSFYLASLLGTACTDLMMVMTGVMNQWPVVVMAP CCCCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHH LQQAPRLLHETAQQLLHPLPLIALVCAATLIVLLAQAMQQKTRLASEFRNTWAVASAVLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TTVIIDGLFLIAALINPGLSGLI HHHHHHHHHHHHHHHCCCHHCCC >Mature Secondary Structure SSGLIKKKQPDSSTFVRNQPLSNPVESQTSEKDFDANFSDLQQLQLWAGALVVLPVFVQ CCCCCCCCCCCCCCHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH APWVRLNPLSACLFTLFLLALGIPLALIGQRGWAVAGELLVGVSGSWLAGCLYWGWLRTQ CCCCEECHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCC PLWHLPVESVVLPIALLGLSSRWRLSSSFYLASLLGTACTDLMMVMTGVMNQWPVVVMAP CCCCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHH LQQAPRLLHETAQQLLHPLPLIALVCAATLIVLLAQAMQQKTRLASEFRNTWAVASAVLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TTVIIDGLFLIAALINPGLSGLI HHHHHHHHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA