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The map label for this gene is secD [H]

Identifier: 335055638

GI number: 335055638

Start: 3202006

End: 3203916

Strand: Direct

Name: secD [H]

Synonym: NA

Alternate gene names: 335055638

Gene position: 3202006-3203916 (Clockwise)

Preceding gene: 335055637

Following gene: 94311879

Centisome position: 81.52

GC content: 65.04

Gene sequence:

>1911_bases
ATGCGCGCGATTATCGACCACGCCAACCGCAATGACTGGCCAACGATGAATCGTTATCCGATTTGGAAATACATCGTGAT
TCTGGTGGCTCTGGCCATCGGCATCACCTACACCATGCCGAACTTCTTCGGCGAGGCGCCCGCCGTCCAGGTATCGTCGG
CCAAGGCCACGGTCAAGGTCGACCTGTCCATGCAGAAGCATGTCGAGGAGATCCTGGCGCAGAACCAGCTGCAGCCTGAC
GGGGTGTTCTTCGACGTGTCCGGCCAGTCCGGCTCGGTCAAGGCGCGCTTCCGCACCACTGACGAGCAGCTCAAGGCCAA
GGACGTGCTGTCGCGCTCGCTGAACCCCGACGCGAACGATGCGACCTATGTCGTGGCGCTGAACCTGCTGTCCGGTTCGC
CGCGCTGGCTGACCGCGCTGCACGCGCTGCCCATGTACCTGGGTCTGGATCTGCGCGGTGGCGTGCACTTCCTGCTACAG
GTGGACATGAAGGGCGCCGTCGACAAGAAGCTCGACAGCCTGGCCGGCGATGCGCGCACGCTGCTGCGCGACAAGAACAT
CCGCCACGGCGGCATTGACCGTGACGGCGAGCGTCTGACCGTGCGCTTCAGCAATGGCGACGACGCGGAACGCGCGCGCG
GCATCCTGGCCGACAACCTGCGCGAGCTGGCCTTCACGATGGACGGCACGAACATCGTCGGCACGTTCACGGAAGCCGCC
CGCAAGACCGTGCAGGACGGCGCCGTCAAGCAGAACATCACCACCCTGCACAATCGTGTGAACGAACTTGGCGTGGCAGA
GCCGGTGATCCAGCAGCAAGGCTCCGACCGCATTGTGGTGCAGCTGCCGGGCGTGCAGGACACCGCCAAGGCCAAGGACA
TCATCGGCCGTACCGCCACGCTCGAGGCGCGCCTGGCCGATCCGGATGTGCGCAACCCGCGCCCGGGTGACCCCGTGCCG
TTCGGCGACGAGCTGTTCACGCAAGGCAACAGCGCCCCGGTGCTGCTGCGCAAGCAGGTGATCTTCACCGGCGACCGTAT
CGAAAGCGCCTCGGCCGGTTTCGACCAGAACCAGCGCCCGTCCGTCAACATCAAGCTCGACGCCCAAGGCGGCCGCATGC
TGCGTGACGTGTCGCGGGAGAACATTGGCAAGCCGATGGGCATCGTCCTGTTCGAGAAGGGCAAGGGCGAAGTGCTGACT
GTGGCGACGATCCAGTCCGAGCTTGGCTCGAGCTTCCAGATCACCGGTTCTTACTCGACCGAAGCCGCCAACGACCTGGC
CCTGCTGCTGCGCGCCGGCTCGCTGGCCGCCCCGATGGAAATCATCGAGGAACGCACAATCGGCCCGTCGCTGGGCGCGG
ACAACATCCAGAAGGGCTTTGACTCGGTGGCCTACGGCTTCGCCGCGATCGCCGTCTTCATGGTGCTGTACTACATGCTG
TTCGGCGTGTTCTCCGTGATCGCGCTGGGCGTGAACCTGCTGCTGCTGGTGGCGGTGCTGTCGATGCTGCAGGCCACGCT
GACGCTGCCTGGCATCGCCGCTATCGCGCTGGTGCTCGGCATGGCCATCGACGCGAACGTGCTGATCAACGAGCGGATCC
GCGAGGAACTGCGCGCGGGCGCATCGCCGCAGATGTCGATCGCCATCGGCTTCGAGCGTGCCTGGGCCACGATTCTCGAC
TCGAACGTGACCACGCTGATCGCTGGCCTGGCGCTGCTGGCCTTTGGCTCGGGCCCGGTGCGCGGCTTTGCCGTGGTGCA
CTGCCTGGGCATTCTGACCTCGATGTTCTCGGCGGTGTTCTTCAACCGCGGCCTGGTCAACCTTTGGTACGGCCGCAAGA
AGAAGCTCCAGGGCTTGGCCATCGGTCAGATCTGGAAGCCGGACACCACCGACACCCCGGTCGCCAAGTAA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: SecYEG protein translocase auxiliary subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 636; Mature: 636

Protein sequence:
NA

Sequences:

>Translated_636_residues
MRAIIDHANRNDWPTMNRYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKVDLSMQKHVEEILAQNQLQPD
GVFFDVSGQSGSVKARFRTTDEQLKAKDVLSRSLNPDANDATYVVALNLLSGSPRWLTALHALPMYLGLDLRGGVHFLLQ
VDMKGAVDKKLDSLAGDARTLLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRELAFTMDGTNIVGTFTEAA
RKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDVRNPRPGDPVP
FGDELFTQGNSAPVLLRKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLT
VATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYYML
FGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAGASPQMSIAIGFERAWATILD
SNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKKLQGLAIGQIWKPDTTDTPVAK
>Mature_636_residues
MRAIIDHANRNDWPTMNRYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKVDLSMQKHVEEILAQNQLQPD
GVFFDVSGQSGSVKARFRTTDEQLKAKDVLSRSLNPDANDATYVVALNLLSGSPRWLTALHALPMYLGLDLRGGVHFLLQ
VDMKGAVDKKLDSLAGDARTLLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRELAFTMDGTNIVGTFTEAA
RKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDVRNPRPGDPVP
FGDELFTQGNSAPVLLRKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLT
VATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYYML
FGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAGASPQMSIAIGFERAWATILD
SNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKKLQGLAIGQIWKPDTTDTPVAK

Specific function: Involved in protein export [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=623, Percent_Identity=42.8571428571429, Blast_Score=488, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 68778; Mature: 68778

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAIIDHANRNDWPTMNRYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCEEEECCCEEEEE
DLSMQKHVEEILAQNQLQPDGVFFDVSGQSGSVKARFRTTDEQLKAKDVLSRSLNPDAND
ECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCC
ATYVVALNLLSGSPRWLTALHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLAGDART
CEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH
LLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRELAFTMDGTNIVGTFTEAA
HHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCEEEHHHHHH
RKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQLPGVQDTAKAKDIIGRTAT
HHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCE
LEARLADPDVRNPRPGDPVPFGDELFTQGNSAPVLLRKQVIFTGDRIESASAGFDQNQRP
EEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC
SVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLTVATIQSELGSSFQITGSYST
CEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHHHCCCEEEECCCCC
EAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYYML
CHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
ASPQMSIAIGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVF
CCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
FNRGLVNLWYGRKKKLQGLAIGQIWKPDTTDTPVAK
HCCCCCEECCCCCHHCCCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRAIIDHANRNDWPTMNRYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCEEEECCCEEEEE
DLSMQKHVEEILAQNQLQPDGVFFDVSGQSGSVKARFRTTDEQLKAKDVLSRSLNPDAND
ECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCC
ATYVVALNLLSGSPRWLTALHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLAGDART
CEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH
LLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRELAFTMDGTNIVGTFTEAA
HHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCEEEHHHHHH
RKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQLPGVQDTAKAKDIIGRTAT
HHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCE
LEARLADPDVRNPRPGDPVPFGDELFTQGNSAPVLLRKQVIFTGDRIESASAGFDQNQRP
EEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC
SVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLTVATIQSELGSSFQITGSYST
CEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHHHCCCEEEECCCCC
EAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYYML
CHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
ASPQMSIAIGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVF
CCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
FNRGLVNLWYGRKKKLQGLAIGQIWKPDTTDTPVAK
HCCCCCEECCCCCHHCCCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]