BacMap

Definition	Vibrio vulnificus CMCP6 chromosome chromosome I, complete sequence.
Accession	NC_004459
Length	3,281,866

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The map label for this gene is yocR [H]

Identifier: 326424091

GI number: 326424091

Start: 2934713

End: 2936146

Strand: Reverse

Name: yocR [H]

Synonym: NA

Alternate gene names: 326424091

Gene position: 2936146-2934713 (Counterclockwise)

Preceding gene: 27366152

Following gene: 27366148

Centisome position: 89.47

GC content: 48.12

Gene sequence:

>1434_bases
GTGGATATGAGTAATACAAGTGCAGCACCACGTGACACGTGGGGGTCTAAACTAGGCTTCGTGATGGCAGCCGCAGGCTC
TGCGGTCGGTTTAGGCAATATATGGAAGTTCCCTTACACAGCTGGTGAGAGTGGCGGCGGTGCATTCGTTGCGATCTACC
TATTTTTCGTTATTTTTATCGGCTTTAGCGTAATGCTCACTGAGTTTGCGATTGGTCGTAAGACAGGTCTTTCTGCAGTT
GGCGCATTTAAGTCAACGGATCGTCGTTGGACGTTCACAGGCGTATTAGGTGTATTCAGTGGTCTATTGATCATGGGTTT
CTACCCAGTGGTTGGTGGCTGGGCACTGGCTTACATCTTCAAAGTGGGCGGTGGTCTATTAAGCACACCAGACACCATTG
GTTCGAGCTTTGGTGCGTTTATTTCCGATCCGGTTCAACCTCTGCTTTGGATGGGTGTCTACCTACTACTGAACATCGTA
ATTGTTATGCGTGGTGTTTCAGGCGGTATCGAGAAAGCGGGCAAGGTCCTAATGCCACTGCTATTTATCATCCTCATCAT
CGTATCGGTGAAAGGTTTGATGTTGCCAGGCGCGATGGCAGGTCTTGAGTTCCTGTTTATGCCGGACTTCTCAAAAGTAG
ACAGCAATGTTGTGCTGGCCGCTCTAGGTCAGGCGTTCTTCTCATTGAGCTTAGGTATGGGTTGTATGATGACCTACGGC
TCTTACTTGAAGAAGCAAGAAAACCTTGTACAAACCACGGGTATGGTTACTGCGATGGATACCGGTGTCGCTATCCTAGC
GGGTGTCGCAATGTTCCCAGCGATGTTTGCTTTTGGTATGGAGCCAGCCGCTGGCCCTGGTCTTGTATTTGTTGTTGTGC
CTCAGTTGTTCTCTGAAATGGGTGGCGTTATTGGTCTAGTTCTAGCGCTCCTGTTCTTTATCGGTTTGACTGTAGCAGCA
CTGACTTCTTCCGTTTCTCTTCTTGAAGTGGTGGTTTCTTACCTCATCGATGAGAAAGGCATGAAGCGTTCAACGGCTGT
TATTTCATCAAGTATTGTGATGGCGTCTTTGTGTATCTTCGCTTCACTGTCACTCGGTGGTGTGGGTCCAAAACTGTTTG
ATACTGGTGCATTTGATATCTTCGACTTGCTAACCGATAAGATCTTCCTTGCGGTGGGTGGTATGTTGGTGTGTATCTTT
GCTGGCTGGCGTTTGAGTCGCGAAGATCTTGAAAAAGAGATCACCAACGACGGCAAAGTCTCTTTCCCACTATTCGGTGT
TTGGTACAACCTAGTGAAGTACATTATCCCTGTAGCGATTGCCATCGTAGCAGTGATGGGCATCAAGTCGGGCTTTGATA
GCGGCAAAGGCGAGATCATGGTTCTTGGTATTTCCATCTTCGTCTTCGCAGGGCTACTGTCGAAGAAACTCTAA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: putative sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:
NA

Sequences:

>Translated_477_residues
MDMSNTSAAPRDTWGSKLGFVMAAAGSAVGLGNIWKFPYTAGESGGGAFVAIYLFFVIFIGFSVMLTEFAIGRKTGLSAV
GAFKSTDRRWTFTGVLGVFSGLLIMGFYPVVGGWALAYIFKVGGGLLSTPDTIGSSFGAFISDPVQPLLWMGVYLLLNIV
IVMRGVSGGIEKAGKVLMPLLFIILIIVSVKGLMLPGAMAGLEFLFMPDFSKVDSNVVLAALGQAFFSLSLGMGCMMTYG
SYLKKQENLVQTTGMVTAMDTGVAILAGVAMFPAMFAFGMEPAAGPGLVFVVVPQLFSEMGGVIGLVLALLFFIGLTVAA
LTSSVSLLEVVVSYLIDEKGMKRSTAVISSSIVMASLCIFASLSLGGVGPKLFDTGAFDIFDLLTDKIFLAVGGMLVCIF
AGWRLSREDLEKEITNDGKVSFPLFGVWYNLVKYIIPVAIAIVAVMGIKSGFDSGKGEIMVLGISIFVFAGLLSKKL
>Mature_477_residues
MDMSNTSAAPRDTWGSKLGFVMAAAGSAVGLGNIWKFPYTAGESGGGAFVAIYLFFVIFIGFSVMLTEFAIGRKTGLSAV
GAFKSTDRRWTFTGVLGVFSGLLIMGFYPVVGGWALAYIFKVGGGLLSTPDTIGSSFGAFISDPVQPLLWMGVYLLLNIV
IVMRGVSGGIEKAGKVLMPLLFIILIIVSVKGLMLPGAMAGLEFLFMPDFSKVDSNVVLAALGQAFFSLSLGMGCMMTYG
SYLKKQENLVQTTGMVTAMDTGVAILAGVAMFPAMFAFGMEPAAGPGLVFVVVPQLFSEMGGVIGLVLALLFFIGLTVAA
LTSSVSLLEVVVSYLIDEKGMKRSTAVISSSIVMASLCIFASLSLGGVGPKLFDTGAFDIFDLLTDKIFLAVGGMLVCIF
AGWRLSREDLEKEITNDGKVSFPLFGVWYNLVKYIIPVAIAIVAVMGIKSGFDSGKGEIMVLGISIFVFAGLLSKKL

Specific function: Putative sodium-dependent transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=397, Percent_Identity=27.7078085642317, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI188528618, Length=414, Percent_Identity=27.2946859903382, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI289191351, Length=415, Percent_Identity=26.5060240963855, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI4557046, Length=415, Percent_Identity=26.5060240963855, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI289191377, Length=415, Percent_Identity=26.5060240963855, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI7657587, Length=406, Percent_Identity=25.1231527093596, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI4507041, Length=412, Percent_Identity=26.2135922330097, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI134304856, Length=414, Percent_Identity=28.743961352657, Blast_Score=119, Evalue=9e-27,
Organism=Homo sapiens, GI58219014, Length=299, Percent_Identity=30.7692307692308, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI171184408, Length=385, Percent_Identity=26.4935064935065, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI171184406, Length=385, Percent_Identity=26.4935064935065, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI171184404, Length=385, Percent_Identity=26.4935064935065, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI197276623, Length=350, Percent_Identity=27.4285714285714, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI54607094, Length=350, Percent_Identity=27.4285714285714, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI92859670, Length=415, Percent_Identity=24.8192771084337, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI4507043, Length=406, Percent_Identity=24.384236453202, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI194018524, Length=293, Percent_Identity=29.6928327645051, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI11181770, Length=291, Percent_Identity=28.5223367697594, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI51468073, Length=301, Percent_Identity=24.9169435215947, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI33354281, Length=295, Percent_Identity=25.4237288135593, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI300360519, Length=362, Percent_Identity=24.0331491712707, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI67782317, Length=401, Percent_Identity=25.6857855361596, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI67782313, Length=401, Percent_Identity=25.6857855361596, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI67782315, Length=401, Percent_Identity=25.6857855361596, Blast_Score=96, Evalue=9e-20,
Organism=Homo sapiens, GI5032097, Length=346, Percent_Identity=25.4335260115607, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI12408638, Length=267, Percent_Identity=24.3445692883895, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI218563756, Length=341, Percent_Identity=25.5131964809384, Blast_Score=83, Evalue=7e-16,
Organism=Homo sapiens, GI21361693, Length=205, Percent_Identity=26.8292682926829, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI289191353, Length=229, Percent_Identity=27.0742358078603, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI197276625, Length=120, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17554804, Length=460, Percent_Identity=26.5217391304348, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17569475, Length=404, Percent_Identity=24.2574257425743, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI133952791, Length=250, Percent_Identity=28.4, Blast_Score=82, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI212642127, Length=274, Percent_Identity=27.7372262773723, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17555248, Length=184, Percent_Identity=31.5217391304348, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71995588, Length=201, Percent_Identity=27.363184079602, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17542050, Length=152, Percent_Identity=28.2894736842105, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17535731, Length=115, Percent_Identity=34.7826086956522, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI17136952, Length=415, Percent_Identity=27.2289156626506, Blast_Score=141, Evalue=8e-34,
Organism=Drosophila melanogaster, GI281364394, Length=415, Percent_Identity=27.4698795180723, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI28574704, Length=415, Percent_Identity=27.4698795180723, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI17136950, Length=415, Percent_Identity=27.4698795180723, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI28574702, Length=415, Percent_Identity=27.4698795180723, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24762620, Length=410, Percent_Identity=27.3170731707317, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI45551183, Length=418, Percent_Identity=26.7942583732057, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI45550877, Length=434, Percent_Identity=26.2672811059908, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24661428, Length=396, Percent_Identity=27.2727272727273, Blast_Score=118, Evalue=8e-27,
Organism=Drosophila melanogaster, GI221329674, Length=395, Percent_Identity=27.0886075949367, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24639514, Length=392, Percent_Identity=26.7857142857143, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24655079, Length=296, Percent_Identity=28.3783783783784, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI281365034, Length=400, Percent_Identity=25.5, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24639516, Length=293, Percent_Identity=28.3276450511945, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24652942, Length=420, Percent_Identity=25.4761904761905, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI45551088, Length=420, Percent_Identity=25.4761904761905, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24654186, Length=536, Percent_Identity=22.9477611940299, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI281364136, Length=410, Percent_Identity=24.8780487804878, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24582567, Length=401, Percent_Identity=25.6857855361596, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24639853, Length=426, Percent_Identity=23.943661971831, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI19921936, Length=201, Percent_Identity=28.3582089552239, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281363702, Length=192, Percent_Identity=27.0833333333333, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI19921352, Length=188, Percent_Identity=27.1276595744681, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24584353, Length=188, Percent_Identity=27.1276595744681, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363700, Length=75, Percent_Identity=44, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 50301; Mature: 50301

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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ECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure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ECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]