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The map label for this gene is dcrA [H]

Identifier: 27366148

GI number: 27366148

Start: 2932963

End: 2934573

Strand: Reverse

Name: dcrA [H]

Synonym: VV1_2868

Alternate gene names: 27366148

Gene position: 2934573-2932963 (Counterclockwise)

Preceding gene: 326424091

Following gene: 326424090

Centisome position: 89.42

GC content: 50.22

Gene sequence:

>1611_bases
ATGTCAGTCAGGAAAAAGCTCTACGCTGGTTTTGGCAGTATTTTAGCCATTATGCTGGTGATGGTGACGACGATTTGGAT
AGAAGTGACGGAGTCGCATTCTGTGGCCAATGAAGTGCGTCAAGACGATGTACCAGAAGTGGTTTACTACTTAATTTTGG
TGGATGAAGCGGGAGACGTCTACCGTGATGCGATGGGGGTTGTGACAGGCGTAGAAGGCGCAGCGCAAGATTACCGTGAC
AACAAAGGGGAGTTTGCGGACGCACTAAGAGAAGTGCGTAAACTTGAAACGCCAGGGGGAGAAGATGATCGCCGCCTTGA
GAAAATTGAATCGTCCATGAAGCAGTTTACTGACGCATTTGAAGCTCAAATTTTGGCGAAAAATGGACAGGGAGACATTG
ATGAATCTCTGATTGTGGCTTTACGCACGTTGTATCAAACCCACTTGATTCCAATTGAAAACATGCTTGATGAGGCATCA
GAGGAAGAAATTGCGGGTGCAGATGCGGCCATGGGGGCCTTAGAGGACTCTCTGTCTAATATTGAGCGTACCATCATGAT
ACTCACCGCGATTGGGATTGTACTGACTTGTGCAATCGCTTACCTGCTTTCAAATTCGATTACCGTCCGTTTGAGTAAGC
TAGATGAAGTGGCTCAACGTGTTGCTGGTGGCGATCTCACCGCAGAAGATATTGAAGATCGTTCAGGCGATGAGTTGGCT
AACCTCGCCGCGTCCGTCAATAAAATGCAGCATTCGCTTGTGAGTCTCATTGGCTCAATCTCTTCGGTCACCCGTGAAGT
GCAAGTGGTGACTGGCGATCTCAATAATGTGAGCCGAGACATTGTTCAGGGCGCATCCGCGCAAGCTGACAAAGCGAATT
TGATTGCCACCGCAGCCGAAGAGCTTAGCCTCACGATCTCTGAAGTCGCGCAACAAGGCACCTCAACGTTTGAGGAAGCC
AAACGTTCAGAGTCTTCAGCCGAAGAGGGGCGAAAAGTGATCGTCGATATGGTGGCGAGCATTCAGCAAGTCTCTCAGCA
AATGAGTGATATGTCGGTGCAAATGAACGCACTAGGAACACATAGCGAACAAATTGGTAGCGTGATTAAGGTGATTGAAG
ATATTGCAGCGCAAACCAACCTTTTGGCGTTGAATGCGGCGATTGAAGCGGCCCGCGCTGGTGAGTTTGGCCGTGGTTTT
GCGGTGGTAGCAGATGAGGTTAGAGCGTTAGCTGAAAGAACCACCAAAGCGACCAAGGAAGTGGCAGATATCATTCAAGC
CATTCAATCAGGGACGCATGATGCGGTGACTTACACTCAAGACAACTGCCGTTTGGTTGAAATTGGTGTTGAGCAAAGCC
AAGGCGCAGTCGCGTCACTGGAGGCGATCGTGGCTGGAGCGGCGAACGTGCAAAGCATGGTGAATTCAATCGCGACCGCC
GCAGAGGAACAGACCGCCGTGACCAAAGAAATCGCCTCTGACATCACGGCCATCAGTGACATCTCAGAGCAATCTCTTGC
ACTTGCCAATCGCAGCTCAGCCAGCGTGGCGGGGCTGGGAAGCAAAGTGGCACAGCTTGAACAGTTGATTGGTAAGTTCC
GTATCGCGTAA

Upstream 100 bases:

>100_bases
GAGGTTTTTTTTTGCGACGCATCACACTAAACATATTGATTAGCTTGTCGATATAAATGGTGATTGCTCTATTTATATTA
AGAAGGGAAGTGTTGTGAAG

Downstream 100 bases:

>100_bases
CACCGCCGCACTCTGGCTCTTTGGCTGGTATTCATGGTGATAAAGGGTATACTTCGCCCTTATTCTTGAAACCAGCCATT
GACGCTTCATTGGGCTTAAA

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MSVRKKLYAGFGSILAIMLVMVTTIWIEVTESHSVANEVRQDDVPEVVYYLILVDEAGDVYRDAMGVVTGVEGAAQDYRD
NKGEFADALREVRKLETPGGEDDRRLEKIESSMKQFTDAFEAQILAKNGQGDIDESLIVALRTLYQTHLIPIENMLDEAS
EEEIAGADAAMGALEDSLSNIERTIMILTAIGIVLTCAIAYLLSNSITVRLSKLDEVAQRVAGGDLTAEDIEDRSGDELA
NLAASVNKMQHSLVSLIGSISSVTREVQVVTGDLNNVSRDIVQGASAQADKANLIATAAEELSLTISEVAQQGTSTFEEA
KRSESSAEEGRKVIVDMVASIQQVSQQMSDMSVQMNALGTHSEQIGSVIKVIEDIAAQTNLLALNAAIEAARAGEFGRGF
AVVADEVRALAERTTKATKEVADIIQAIQSGTHDAVTYTQDNCRLVEIGVEQSQGAVASLEAIVAGAANVQSMVNSIATA
AEEQTAVTKEIASDITAISDISEQSLALANRSSASVAGLGSKVAQLEQLIGKFRIA

Sequences:

>Translated_536_residues
MSVRKKLYAGFGSILAIMLVMVTTIWIEVTESHSVANEVRQDDVPEVVYYLILVDEAGDVYRDAMGVVTGVEGAAQDYRD
NKGEFADALREVRKLETPGGEDDRRLEKIESSMKQFTDAFEAQILAKNGQGDIDESLIVALRTLYQTHLIPIENMLDEAS
EEEIAGADAAMGALEDSLSNIERTIMILTAIGIVLTCAIAYLLSNSITVRLSKLDEVAQRVAGGDLTAEDIEDRSGDELA
NLAASVNKMQHSLVSLIGSISSVTREVQVVTGDLNNVSRDIVQGASAQADKANLIATAAEELSLTISEVAQQGTSTFEEA
KRSESSAEEGRKVIVDMVASIQQVSQQMSDMSVQMNALGTHSEQIGSVIKVIEDIAAQTNLLALNAAIEAARAGEFGRGF
AVVADEVRALAERTTKATKEVADIIQAIQSGTHDAVTYTQDNCRLVEIGVEQSQGAVASLEAIVAGAANVQSMVNSIATA
AEEQTAVTKEIASDITAISDISEQSLALANRSSASVAGLGSKVAQLEQLIGKFRIA
>Mature_535_residues
SVRKKLYAGFGSILAIMLVMVTTIWIEVTESHSVANEVRQDDVPEVVYYLILVDEAGDVYRDAMGVVTGVEGAAQDYRDN
KGEFADALREVRKLETPGGEDDRRLEKIESSMKQFTDAFEAQILAKNGQGDIDESLIVALRTLYQTHLIPIENMLDEASE
EEIAGADAAMGALEDSLSNIERTIMILTAIGIVLTCAIAYLLSNSITVRLSKLDEVAQRVAGGDLTAEDIEDRSGDELAN
LAASVNKMQHSLVSLIGSISSVTREVQVVTGDLNNVSRDIVQGASAQADKANLIATAAEELSLTISEVAQQGTSTFEEAK
RSESSAEEGRKVIVDMVASIQQVSQQMSDMSVQMNALGTHSEQIGSVIKVIEDIAAQTNLLALNAAIEAARAGEFGRGFA
VVADEVRALAERTTKATKEVADIIQAIQSGTHDAVTYTQDNCRLVEIGVEQSQGAVASLEAIVAGAANVQSMVNSIATAA
EEQTAVTKEIASDITAISDISEQSLALANRSSASVAGLGSKVAQLEQLIGKFRIA

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=348, Percent_Identity=29.8850574712644, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI2367378, Length=371, Percent_Identity=29.6495956873315, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1788194, Length=317, Percent_Identity=30.5993690851735, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1788195, Length=337, Percent_Identity=29.9703264094956, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1789453, Length=340, Percent_Identity=27.6470588235294, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 57014; Mature: 56883

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRKKLYAGFGSILAIMLVMVTTIWIEVTESHSVANEVRQDDVPEVVYYLILVDEAGDV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHEECCCCHH
YRDAMGVVTGVEGAAQDYRDNKGEFADALREVRKLETPGGEDDRRLEKIESSMKQFTDAF
HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
EAQILAKNGQGDIDESLIVALRTLYQTHLIPIENMLDEASEEEIAGADAAMGALEDSLSN
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHCCHHHHHHHHHHHHHH
IERTIMILTAIGIVLTCAIAYLLSNSITVRLSKLDEVAQRVAGGDLTAEDIEDRSGDELA
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCHHHHCCCCCHHHH
NLAASVNKMQHSLVSLIGSISSVTREVQVVTGDLNNVSRDIVQGASAQADKANLIATAAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHH
ELSLTISEVAQQGTSTFEEAKRSESSAEEGRKVIVDMVASIQQVSQQMSDMSVQMNALGT
HHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HSEQIGSVIKVIEDIAAQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VADIIQAIQSGTHDAVTYTQDNCRLVEIGVEQSQGAVASLEAIVAGAANVQSMVNSIATA
HHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AEEQTAVTKEIASDITAISDISEQSLALANRSSASVAGLGSKVAQLEQLIGKFRIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVRKKLYAGFGSILAIMLVMVTTIWIEVTESHSVANEVRQDDVPEVVYYLILVDEAGDV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHEECCCCHH
YRDAMGVVTGVEGAAQDYRDNKGEFADALREVRKLETPGGEDDRRLEKIESSMKQFTDAF
HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
EAQILAKNGQGDIDESLIVALRTLYQTHLIPIENMLDEASEEEIAGADAAMGALEDSLSN
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHCCHHHHHHHHHHHHHH
IERTIMILTAIGIVLTCAIAYLLSNSITVRLSKLDEVAQRVAGGDLTAEDIEDRSGDELA
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCHHHHCCCCCHHHH
NLAASVNKMQHSLVSLIGSISSVTREVQVVTGDLNNVSRDIVQGASAQADKANLIATAAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHH
ELSLTISEVAQQGTSTFEEAKRSESSAEEGRKVIVDMVASIQQVSQQMSDMSVQMNALGT
HHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HSEQIGSVIKVIEDIAAQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VADIIQAIQSGTHDAVTYTQDNCRLVEIGVEQSQGAVASLEAIVAGAANVQSMVNSIATA
HHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AEEQTAVTKEIASDITAISDISEQSLALANRSSASVAGLGSKVAQLEQLIGKFRIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]