| Definition | Vibrio vulnificus CMCP6 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_004459 |
| Length | 3,281,866 |
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The map label for this gene is ppc [H]
Identifier: 326423826
GI number: 326423826
Start: 1348737
End: 1351403
Strand: Reverse
Name: ppc [H]
Synonym: NA
Alternate gene names: 326423826
Gene position: 1351403-1348737 (Counterclockwise)
Preceding gene: 27364764
Following gene: 27364762
Centisome position: 41.18
GC content: 50.24
Gene sequence:
>2667_bases ATGGATGTAATTTTTTTACGAGGCAGGATGACAATGAACGAGAAATACGCCGCGCTCAAGAGTAATGTCAGCATGTTGGG GCACTTATTGGGTAACACCATTCAAGAGGCCCATGGCGACGAAATCTTAGAGAAGGTGGAGACCATTCGTAAGCTCTCCA AATCTGCCCGCGCAGGCAATCAGGCTGATCGTAACAACCTGATTGAAGAAATCAAAAGCCTGCCAGATGAGCAACTCACC CCGGTGGCTCGCGCTTTTAACCAATTTCTGAATTTGACCAACATTGCCGAGCAATACCACACCATCTCTCGCCATTGCGA TGCACACGTGTGTGAGCCGGATGCGATCAATACGCTGTTTGCTAAGCTTGGTCAAAACGGCATCAATAAACTCGATACCG CCCAAGCGATTCGTGAATTGAACATTGAACTGGTGCTGACTGCGCACCCGACGGAAATCACGCGCCGCACCATGATCAAT AAACTGGTCAAAATCAACGAATGCCTGTCTAAGTTAGAGCTGAGCGATCTTTCTTACAAAGAGCGCCACAAGACAGAAAA ACGCCTCGAGCAACTTATCGCACAAAGCTGGCACTCAGACGTGATTCGCAAACAGCGCCCAACACCACTCGATGAAGCGA AGTGGGGGTTTGCCGTAGTGGAAAATTCACTCTGGGAAGCAGTGCCAGATTTTCTACGCGAACTCGATGAAAAGCTCAAA GACTATCTAGACCAAGGCTTGCCAATTGATGCTCGCCCTGTTCACTTCTCATCTTGGATGGGTGGTGACCGAGATGGCAA CCCGTTTGTGACCCATACTGTGACACGTGAAGTGTTGCTACTCTCGCGCTGGAAAGCGGCGGATCTTTACCTCAAAGACA TCAATGAGTTGATCAGCGAGCTGTCAATGACCAAGTGCAATGACACCGTTCGTCAATTGGCAGGTGAAGATGAACACGAG CCTTATCGTGCCATCCTGAAACAACTGCGCACGCTGCTGAGTGATACCAAAGAGATCCTGGATGCGAAAATTAACGGCCA GAAGCTGGCAGTAAAAGCGCCGCTGCAAAGTGTTGAGCAACTTTGGGATCCTCTTTTCGCTTGTTATCAGTCACTACGCG AATGTGGCATGAGCATGATCGCCGAAGGCTCACTACTCGATACACTGCGTCGTGTCAAAGCGTTTGGTGTGCATCTGGTT CGCTTGGACATTCGCCAAGAAAGTACCCGTCACGCTGACGTCCTTTCAGAACTGACACGTTACTTAGGCATTGGTGATTA CAATCACTGGAGCGAACAAGACAAAATCGCGTTCTTGACCAATGAATTGGCATCGAAGCGCCCATTGCTACCACGTGACT GGCAACCTTCAGAGCAAGTGAAAGAAGTGCTCGATACGTGCAAAATCATTGCCGCGCAATCTCGTGAAGCGTTTGGTGCT TACGTCATCTCGATGGCCAAGACTGCCTCTGATGTACTCGCGGTGCATCTACTGCTGCAAGAATCAGGCTGTCCTTATCG CATGGACGTTTGCCCGCTGTTTGAAACGCTCGACGATCTAAACAACGCCGAAGCGGTGATCAAACAATTGATGAGCATTG ACCTCTATCGTGGCTTTATTCAAAACCATCAAATGGTGATGATCGGTTATTCCGACTCAGCAAAAGACGCGGGCGTAATG GCGGCGGGTTGGGCTCAATACCATGCAATGGAAGCCTTAGTGAACGTCGCTGAACAAGAAGGCATTGAGCTGACCTTATT CCACGGCCGTGGCGGTACCATTGGTCGTGGCGGTGCACCCGCTCATGCAGCGCTGCTCTCTCAACCACCAAAGAGCTTGA AAGGCGGCCTACGCGTCACCGAACAAGGTGAGATGATTCGCTTCAAACTCGGTTTGCCTGATGTGGCCGTTAATAGCTTC AACATGTACGCCAGTGCGATCCTTGAAGCTAATTTGCTACCACCACCAGAGCCAAAACAAGAGTGGCGCGATCTGATGGA AGTGCTGTCGCAAGTAAGCTGTGAAGCCTACCGCAGTGTGGTTCGTGGTGAGCCAGACTTTGTCCCTTACTTCCGCCAAG CAACACCTGAGCTGGAGTTGGGTAAACTGCCTCTAGGCTCTCGCCCTGCCAAGCGTAACCCAAATGGTGGCGTGGAAAGC CTACGTGCGATTCCTTGGATTTTCTCTTGGAGCCAAAACCGCTTGCTATTGCCTGCGTGGTTAGGTGCTGGTGAAGCGAT TCAGTACTCGATTGACAAAGGCCATCAAGCGCTTTTGGAAGAAATGTGCCGTGAATGGCCATTTTTCTCCACGCGTTTGG GCATGCTTGAGATGGTGTACCTCAAGTGTAACAGTGAGATTTCTCGTTACTATGATGAACGTCTCGCCGACAAATCGCTG CTACCTCTGGGTGATCGTTTACGTGATCAGCTGCAAAGCGACATCAAAGCCGTGCTTAACGTCGAAAACAACGAGAACTT GATGCAAAGCGATCCTTGGGGTCAAGAGTCTATTCGACTACGTAATATCTACATCGAACCGTTGAATATGCTTCAAGCAG AACTGCTTTACCGCACTCGCCAAGCAGGCGTGGTATCGGAAGCGCTTGAAGAAGCGTTGATGGTGACCATCGCGGGTATC GCCGCAGGTATGCGTAACACAGGTTAA
Upstream 100 bases:
NA
Downstream 100 bases:
NA
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 888; Mature: 888
Protein sequence:
NA
Sequences:
>Translated_888_residues MDVIFLRGRMTMNEKYAALKSNVSMLGHLLGNTIQEAHGDEILEKVETIRKLSKSARAGNQADRNNLIEEIKSLPDEQLT PVARAFNQFLNLTNIAEQYHTISRHCDAHVCEPDAINTLFAKLGQNGINKLDTAQAIRELNIELVLTAHPTEITRRTMIN KLVKINECLSKLELSDLSYKERHKTEKRLEQLIAQSWHSDVIRKQRPTPLDEAKWGFAVVENSLWEAVPDFLRELDEKLK DYLDQGLPIDARPVHFSSWMGGDRDGNPFVTHTVTREVLLLSRWKAADLYLKDINELISELSMTKCNDTVRQLAGEDEHE PYRAILKQLRTLLSDTKEILDAKINGQKLAVKAPLQSVEQLWDPLFACYQSLRECGMSMIAEGSLLDTLRRVKAFGVHLV RLDIRQESTRHADVLSELTRYLGIGDYNHWSEQDKIAFLTNELASKRPLLPRDWQPSEQVKEVLDTCKIIAAQSREAFGA YVISMAKTASDVLAVHLLLQESGCPYRMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFIQNHQMVMIGYSDSAKDAGVM AAGWAQYHAMEALVNVAEQEGIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSF NMYASAILEANLLPPPEPKQEWRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVES LRAIPWIFSWSQNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVYLKCNSEISRYYDERLADKSL LPLGDRLRDQLQSDIKAVLNVENNENLMQSDPWGQESIRLRNIYIEPLNMLQAELLYRTRQAGVVSEALEEALMVTIAGI AAGMRNTG >Mature_888_residues MDVIFLRGRMTMNEKYAALKSNVSMLGHLLGNTIQEAHGDEILEKVETIRKLSKSARAGNQADRNNLIEEIKSLPDEQLT PVARAFNQFLNLTNIAEQYHTISRHCDAHVCEPDAINTLFAKLGQNGINKLDTAQAIRELNIELVLTAHPTEITRRTMIN KLVKINECLSKLELSDLSYKERHKTEKRLEQLIAQSWHSDVIRKQRPTPLDEAKWGFAVVENSLWEAVPDFLRELDEKLK DYLDQGLPIDARPVHFSSWMGGDRDGNPFVTHTVTREVLLLSRWKAADLYLKDINELISELSMTKCNDTVRQLAGEDEHE PYRAILKQLRTLLSDTKEILDAKINGQKLAVKAPLQSVEQLWDPLFACYQSLRECGMSMIAEGSLLDTLRRVKAFGVHLV RLDIRQESTRHADVLSELTRYLGIGDYNHWSEQDKIAFLTNELASKRPLLPRDWQPSEQVKEVLDTCKIIAAQSREAFGA YVISMAKTASDVLAVHLLLQESGCPYRMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFIQNHQMVMIGYSDSAKDAGVM AAGWAQYHAMEALVNVAEQEGIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSF NMYASAILEANLLPPPEPKQEWRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVES LRAIPWIFSWSQNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVYLKCNSEISRYYDERLADKSL LPLGDRLRDQLQSDIKAVLNVENNENLMQSDPWGQESIRLRNIYIEPLNMLQAELLYRTRQAGVVSEALEEALMVTIAGI AAGMRNTG
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=884, Percent_Identity=63.5746606334842, Blast_Score=1120, Evalue=0.0,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 100222; Mature: 100222
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: PS00781 PEPCASE_1 ; PS00393 PEPCASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVIFLRGRMTMNEKYAALKSNVSMLGHLLGNTIQEAHGDEILEKVETIRKLSKSARAGN CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QADRNNLIEEIKSLPDEQLTPVARAFNQFLNLTNIAEQYHTISRHCDAHVCEPDAINTLF CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH AKLGQNGINKLDTAQAIRELNIELVLTAHPTEITRRTMINKLVKINECLSKLELSDLSYK HHHCCCCCCHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH ERHKTEKRLEQLIAQSWHSDVIRKQRPTPLDEAKWGFAVVENSLWEAVPDFLRELDEKLK HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DYLDQGLPIDARPVHFSSWMGGDRDGNPFVTHTVTREVLLLSRWKAADLYLKDINELISE HHHHCCCCCCCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LSMTKCNDTVRQLAGEDEHEPYRAILKQLRTLLSDTKEILDAKINGQKLAVKAPLQSVEQ HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHH LWDPLFACYQSLRECGMSMIAEGSLLDTLRRVKAFGVHLVRLDIRQESTRHADVLSELTR HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHH YLGIGDYNHWSEQDKIAFLTNELASKRPLLPRDWQPSEQVKEVLDTCKIIAAQSREAFGA HHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH YVISMAKTASDVLAVHLLLQESGCPYRMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFI HHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH QNHQMVMIGYSDSAKDAGVMAAGWAQYHAMEALVNVAEQEGIELTLFHGRGGTIGRGGAP CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC AHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNMYASAILEANLLPPPEPKQ HHHHHHCCCCHHHHCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHH EWRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVES HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH LRAIPWIFSWSQNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVY HHHCCHHEECCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LKCNSEISRYYDERLADKSLLPLGDRLRDQLQSDIKAVLNVENNENLMQSDPWGQESIRL HHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE RNIYIEPLNMLQAELLYRTRQAGVVSEALEEALMVTIAGIAAGMRNTG EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MDVIFLRGRMTMNEKYAALKSNVSMLGHLLGNTIQEAHGDEILEKVETIRKLSKSARAGN CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QADRNNLIEEIKSLPDEQLTPVARAFNQFLNLTNIAEQYHTISRHCDAHVCEPDAINTLF CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH AKLGQNGINKLDTAQAIRELNIELVLTAHPTEITRRTMINKLVKINECLSKLELSDLSYK HHHCCCCCCHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH ERHKTEKRLEQLIAQSWHSDVIRKQRPTPLDEAKWGFAVVENSLWEAVPDFLRELDEKLK HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DYLDQGLPIDARPVHFSSWMGGDRDGNPFVTHTVTREVLLLSRWKAADLYLKDINELISE HHHHCCCCCCCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LSMTKCNDTVRQLAGEDEHEPYRAILKQLRTLLSDTKEILDAKINGQKLAVKAPLQSVEQ HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHH LWDPLFACYQSLRECGMSMIAEGSLLDTLRRVKAFGVHLVRLDIRQESTRHADVLSELTR HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHH YLGIGDYNHWSEQDKIAFLTNELASKRPLLPRDWQPSEQVKEVLDTCKIIAAQSREAFGA HHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH YVISMAKTASDVLAVHLLLQESGCPYRMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFI HHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH QNHQMVMIGYSDSAKDAGVMAAGWAQYHAMEALVNVAEQEGIELTLFHGRGGTIGRGGAP CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC AHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNMYASAILEANLLPPPEPKQ HHHHHHCCCCHHHHCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHH EWRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVES HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH LRAIPWIFSWSQNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVY HHHCCHHEECCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LKCNSEISRYYDERLADKSLLPLGDRLRDQLQSDIKAVLNVENNENLMQSDPWGQESIRL HHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE RNIYIEPLNMLQAELLYRTRQAGVVSEALEEALMVTIAGIAAGMRNTG EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA